Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09232 ATGGTGCATAATTCAGAGGAAAACCCTTACAATCACTCTATTTCCATTGAAAATTTAAACCGCTATAAGCATTTTCTCTATGGACTTAACTCCCAAGTTAATCAGCTTGAGAAGCAAGTAAAGGAGGTTGAACAGTTTTACCAATCCATTGATGTTCTAAACAATGATTGCAAAAACAAAGGTCGGGAGAAGCCTCCTACTGGATCTAGGAAGCCGCTGCAATGTGCTTCAGAAGAAATGCAAGAGGTCATGCGCCATTTCTCCAAAATGTTGAGTGAGATAACTCAGCACAGATGGGCATGGCCCTTTTTGGAACCTGTAGATGTTGAAGGTCTTGGGCTGGATGATTATTTTGAGATCATAGAGAAGCCTATGGATTTTAGCACTATAAAAAGAAAAATGAATGCTAAAGATGGCTCTGGTTATAAAAATGTGAGGGAGATATATGCTGATGTAAGGCTGATTTTTAATAATGCAACGAAATACAATAATGATGAAAAGAGTGACGTCCATGTGATGGCCAAGACCCTGCTGCACAAATTTGAGAAGAAATGGTTGCTTCTTTTGCCTAAAGTTGCTAAGGCGGAGAGTGAACTATCAAAAGAAGAAGCACGTGAGAATTTGACTAAAAAGCTTGCTCAAGAAACTGCTTATGCCAACATGACTAGGAAGTTAAGCGCTGAGCTTTCTAAGGCAGATATGACTTTGACGAATCTCAAAACTACAATGATTGCAAAATGCAGGAAACTGTCACCTCTGGAGAAATCATTACTTGCAGCTGAAATTACCAAATTGTCTCCGGATAACCTTCGCAACGCGTTAGAGATACTTAATGAGAATAATCCAAATTTCCAATATAGTGTTGACGACGTGACTACTGAAGATGTGACCCTTGACCTCGACTCTCAGAGCAACTACAACGCGTGGAGATTGTATATGTTTGTCAAAAACGCGTTAGAACTTCAAGATGCAACAAGCGCGGTTACTCATGATAACAACATTGAGGAAAAGGAACCAGATGCCAAAAAAAGGAGAATGGTGTGA 1044 0.3966 MVHNSEENPYNHSISIENLNRYKHFLYGLNSQVNQLEKQVKEVEQFYQSIDVLNNDCKNKGREKPPTGSRKPLQCASEEMQEVMRHFSKMLSEITQHRWAWPFLEPVDVEGLGLDDYFEIIEKPMDFSTIKRKMNAKDGSGYKNVREIYADVRLIFNNATKYNNDEKSDVHVMAKTLLHKFEKKWLLLLPKVAKAESELSKEEARENLTKKLAQETAYANMTRKLSAELSKADMTLTNLKTTMIAKCRKLSPLEKSLLAAEITKLSPDNLRNALEILNENNPNFQYSVDDVTTEDVTLDLDSQSNYNAWRLYMFVKNALELQDATSAVTHDNNIEEKEPDAKKRRMV 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09232 347 PANTHER OSJNBA0053K19.4 PROTEIN 15 320 - -
Vifa1g09232 347 ProSiteProfiles Bromodomain profile. 95 170 IPR001487 GO:0005515
Vifa1g09232 347 SMART bromo_6 76 190 IPR001487 GO:0005515
Vifa1g09232 347 Pfam Bromodomain extra-terminal - transcription regulation 250 317 IPR027353 -
Vifa1g09232 347 SUPERFAMILY Bromodomain 77 190 IPR036427 GO:0005515
Vifa1g09232 347 Gene3D - 51 211 IPR036427 GO:0005515
Vifa1g09232 347 PRINTS Bromodomain signature 151 170 IPR001487 GO:0005515
Vifa1g09232 347 PRINTS Bromodomain signature 98 111 IPR001487 GO:0005515
Vifa1g09232 347 PRINTS Bromodomain signature 114 130 IPR001487 GO:0005515
Vifa1g09232 347 Pfam Bromodomain 88 175 IPR001487 GO:0005515
Vifa1g09232 347 Gene3D - 245 323 IPR038336 -
Vifa1g09232 347 ProSiteProfiles NET domain profile. 240 326 IPR027353 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09232 Vifa-Chr1 1461330317 1461338306 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09232 - - cam:101515481 430.254