Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09209 ATGCCTTCACTTCCCCAAATTACCCTCACTTTTATGTTCTATTTACTTATCCTATCCCCAACACCATCCTTTTCACTCAACATCACCGCTCTTCTTTCAACTTTCCCCAACTTATCCCAATTCACCGCCCTCCTCTCCGCCGCTACTCCCCTCACCGCCGACCTCTCCCACCGCACTTCCATCTCTCTCCTCGCCGTCCCAAACTCCTTCTTATCAACTGACCCTAACCTCTCTCACCACCAGCTCTCCTCCTCCGCACTTACCGACGTCCTCCGCTACCATGTCCTCCTTCAATTCCTATCATGGTCCGACCTCCACTCCCTCCCTCCCTCCGGCAAACTCTTCACCACTCTCTTCCAAACAACCGGCCGCGCCACCAACAATTTCGGCTCCGTCAACATCACTCACGACCCTCACTCCAATCTCGTCTCGATTCGTTCTCCTGCTCCTTATTCCTCTTCAAACGCAACCGTCATGGAACTTATCAAAACCCTACCCTACAATATCACGATCTTCACCGTTAATTCTCTCTTAATCCCTTACGGTTTCGATCTCATGGCATCGGAAACTCGTCCTAGCATACTCCTCAATATCACCAAAACTCTAATCGACGCTCACAACTTCAATGTCGCTGCCTCCATGCTCTCAGCTTCCGGTGTTGTTAACGAATTCGAAGCCGGTGAAGGTGGTTCCGGAATCACTTTATTTATTCCCGTCGACGAAGCTTTCGCCGATCTACCTCCTTCCGTTTCGCTCCAGTCACTTCCGGCGGATAAGAAAGCGGTTGTGCTCAAAGCTCATGTTCTCCGTGCTTATTACCCTCTCGGTTCGCTTCAATCCACCGCAAATCCATTGCAACCAACGCTCGCCACGGAAGCCATGGGCGCTGGAAGCTTCACGCTCAACATTTCAACGTTTAACGGCTCGGTCGCGATTAACACCGGAATTGTTCAGGGGATAATTACTCAGACAGTTTTTGATCAGAACCCTATTGCGATTTTCGGTGTTTCCAAGGTTTTATTACCGAGAGAGATTTTCGGGAAAAACCCAATTATGTCTGTGAAATCGCCTCCGGACATTGGTGCTCCTCCTCCTTATAATGATGCTTCTTCGCCGTCTGGATTTGAGGGCCAGCCGTCACACCTTTCTTCACCGCCTGGGTTTGGTGAAGATGTTACCTCGAATGTGGCCGGTGTTTATGGTTCTGAGTTATTTAGTTTTGTTCTTTGTTGTATAAATTTGTATTTATTGGTATAA 1257 0.4893 MPSLPQITLTFMFYLLILSPTPSFSLNITALLSTFPNLSQFTALLSAATPLTADLSHRTSISLLAVPNSFLSTDPNLSHHQLSSSALTDVLRYHVLLQFLSWSDLHSLPPSGKLFTTLFQTTGRATNNFGSVNITHDPHSNLVSIRSPAPYSSSNATVMELIKTLPYNITIFTVNSLLIPYGFDLMASETRPSILLNITKTLIDAHNFNVAASMLSASGVVNEFEAGEGGSGITLFIPVDEAFADLPPSVSLQSLPADKKAVVLKAHVLRAYYPLGSLQSTANPLQPTLATEAMGAGSFTLNISTFNGSVAINTGIVQGIITQTVFDQNPIAIFGVSKVLLPREIFGKNPIMSVKSPPDIGAPPPYNDASSPSGFEGQPSHLSSPPGFGEDVTSNVAGVYGSELFSFVLCCINLYLLV 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09209 418 Gene3D FAS1 domain 187 343 IPR036378 -
Vifa1g09209 418 Gene3D FAS1 domain 20 180 IPR036378 -
Vifa1g09209 418 FunFam fasciclin-like arabinogalactan protein 4 25 180 - -
Vifa1g09209 418 Pfam Fasciclin domain 207 342 IPR000782 -
Vifa1g09209 418 ProSiteProfiles FAS1/BIgH3 domain profile. 195 340 IPR000782 -
Vifa1g09209 418 ProSiteProfiles FAS1/BIgH3 domain profile. 25 178 IPR000782 -
Vifa1g09209 418 FunFam Fasciclin-like arabinogalactan protein 4 196 343 - -
Vifa1g09209 418 SMART fasc_3 234 343 IPR000782 -
Vifa1g09209 418 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 8 393 IPR033254 -
Vifa1g09209 418 SUPERFAMILY FAS1 domain 202 342 IPR036378 -
Vifa1g09209 418 MobiDBLite consensus disorder prediction 356 387 - -
Vifa1g09209 418 SUPERFAMILY FAS1 domain 24 181 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09209 Vifa-Chr1 1456304287 1456305543 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09209 - - psat:127138231 744.577