Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09197 ATGCCACCACCCCGAGCGCTTCCAGGGTTCTATTTCGACGCAGAGAAAAACCGTTATTTCCCGATCAAAAACCCCATTCCCGGCTCTTCTTCCAAGAAACCTAAAATCACCACTCCAAAACCTCCCCAAACCGATCCGTTTCAAGAAAAGAGTAGAAGTTCTTGTAGGAAGCTTCGTAACAGAACGTCGAAGCTGCTTCAGATTAGGGAGTTAGATGGTCGTCATGTTAGTGCCTCACATTATTGCAAGTGTAACTTCACTGAGGAGTTTCGGAGAATGCGAACGTCTCAGCCCACCATTTGGAAGTATCAAGGAACTGATAGGATGTGTATCAGTGCTTTGGAACACTTGAATGTTGATGTGCAGACACTAGAAGGTAGATTTAGGACGGATGTTTTGTTGAGTGGAAGCATCAGTGGCTCGCTGAGTTTTTCTGAAGTTGGAAGGATTGGGCAAAATTTCAATGACGGGGTAAAGTGGATGCCATATTGTATGAGGAGTAATATTAAAGGGAAAGAAGATGGGCATATCAAGGTGCCAGGGCCTCTTTTTAGACATAATGGAGCTTCGCTGCATATGTCATCCAGAATATCTTGTATAAGATTGGGTCCAGATTTAGCCCCTAATGCTGCGAGTGATAGTCCAAGTGTTGGAAATGCATTATTTACTACTCTTGGATCAGAAACATCTGGTGGATCTGTTTATACCATCAGTCTTGCTGAGCCAATAGATCTTGGAGCAGGAATTCTAAATACATGGAGTAGACTAGAGGAAATAACTTCTTTCATGTGTACCCTTTGGACAGCTGAATACGACTATAACAGACATCGGGCTATAATTGGTACCAATCAGGGAGGTGCTTCAGTGGATCTGGAAAGTGGGACAAGGTCATGGTTTTTACGTTGTAAAAGTGATGTTTTTGCACAACAGATTGTTGATTCAGGAAATGTGATTTTATGTGGACTAAGAAACGGGGAAGTTGTCTCTGTAGATTTTAGAAAGAAAAGATTGCTTTCTAGTAGATTTCCTGAGCATAGGATATCATATGTATCTTCAGATAAGAGAGTTGGAAGTTCTAAGCTTGCAGGAAACATTTATCCTTCACATACCATTAAGATGCCTTCATCTATATCCTGTTTGGCATCACTTAAATATGATGACCAGTACTTCTTGGCAAGCTCTGTGGATGGATCGATAAAGCTATATGACCGCCGCATGCTCCAGAAGGGTGCTGTTCAATCTTATGAAGGGCACGTGAATTCCCATACTCAAATACAGCTCGGTGTTGACCCAGATGAGAGATATGTTATGTCAGGCGGGGAGGATTGCAAGCTACGCATATGGAGTATAAAATCTGGGGAATTGCTTTTGGAGGATAAATTTTCTAATTCAGTTCTCACCACTGTGTGCTATCAATCATTTAAAAAATTTAAAGCAGAGGAAGAAAGCCAGTACACATACAATTCTTCTTTGGGTGCATGGCTTGGATCATATGAAGGGCTCTTTTATATGGACTGGCTGTGA 1524 0.418 MPPPRALPGFYFDAEKNRYFPIKNPIPGSSSKKPKITTPKPPQTDPFQEKSRSSCRKLRNRTSKLLQIRELDGRHVSASHYCKCNFTEEFRRMRTSQPTIWKYQGTDRMCISALEHLNVDVQTLEGRFRTDVLLSGSISGSLSFSEVGRIGQNFNDGVKWMPYCMRSNIKGKEDGHIKVPGPLFRHNGASLHMSSRISCIRLGPDLAPNAASDSPSVGNALFTTLGSETSGGSVYTISLAEPIDLGAGILNTWSRLEEITSFMCTLWTAEYDYNRHRAIIGTNQGGASVDLESGTRSWFLRCKSDVFAQQIVDSGNVILCGLRNGEVVSVDFRKKRLLSSRFPEHRISYVSSDKRVGSSKLAGNIYPSHTIKMPSSISCLASLKYDDQYFLASSVDGSIKLYDRRMLQKGAVQSYEGHVNSHTQIQLGVDPDERYVMSGGEDCKLRIWSIKSGELLLEDKFSNSVLTTVCYQSFKKFKAEEESQYTYNSSLGAWLGSYEGLFYMDWL 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09197 507 SUPERFAMILY WD40 repeat-like 231 471 IPR036322 GO:0005515
Vifa1g09197 507 PANTHER DDB1- AND CUL4-ASSOCIATED FACTOR 4-RELATED 1 506 - -
Vifa1g09197 507 Gene3D - 258 492 IPR015943 GO:0005515
Vifa1g09197 507 Pfam WD domain, G-beta repeat 412 449 IPR001680 GO:0005515
Vifa1g09197 507 Pfam WD domain, G-beta repeat 375 403 IPR001680 GO:0005515
Vifa1g09197 507 SMART WD40_4 364 403 IPR001680 GO:0005515
Vifa1g09197 507 SMART WD40_4 408 449 IPR001680 GO:0005515
Vifa1g09197 507 ProSiteProfiles Trp-Asp (WD) repeats profile. 427 458 IPR001680 GO:0005515
Vifa1g09197 507 MobiDBLite consensus disorder prediction 22 54 - -
Vifa1g09197 507 MobiDBLite consensus disorder prediction 30 49 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09197 388 460 Miscellaneous Gene Families AT5G08390 34.247 2.03e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09197 K11799 - gmx:100798753 668.692