Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09112 ATGGCAGCATCATTGGCATGCCTTATTGGGAATAGTTTATCTACACACAGTAATAAAGTAAATATTCACAAGGACATAAATGGAAGACATATCTTCTTTTCTTGGGGACATTCATTGTTGAAAAGAGCATCAAAAACTATATTAGTCAAGGGCAAGGCATCTTCGGATCAAAGGGAACATGAAGGGAGAAGAGGATTTCTGAAATTATTGAACCTGACAGTTGGCTTACCCGCATTATTAGGAAGCGCAAAAGCTTACGCTGATGAACAAGGGGTTTCATCCTCCAAAATGTCTTATTCTAGGTTTCTCGAGTATTTGGACAAAGACAGGGTTAAAAAAGTTGATCTGTATGAGAATGGAACTATAGCTATTGTAGAGGCTATTTCTCCCGAGTTAGGTAATAGGGTGCAGCGAGTGCGAGTTCAACTTCCTGGACTTAGCCAAGAGCTTCTTCAGAAGTTCAGGCAAAACAACATCAACTTTGCAGCTCATAATGCCGAAGAAGAGTCAGATTCCTTGTTTTCAAACCTGATTGGAAATTTGGCTGTCCCTGTAATTGTGATTGGAGGACTGTTCCTTCTCTCACGACGGGCATCTGGAGGGAGGGCTGGTCCCGGGTCTGGCTTTCCTTTTGCTTTTGGTCAATCTAAAGCCAAATTTCAAATGGAACCGAATACCGGAGTTACATTTGATGATGTTGCCGGGGTAGATGAAGCCAAGCAGGATTTTGTGGAGGTAGTGGAGTTTCTAAAAAAGCCTGAGAGGTTCACTGCTATTGGAGCTCGCATACCGAAAGGAGTTCTTCTTGTTGGTCCCCCGGGGACTGGGAAGACTCTATTGGCCAAGGCTATTGCTGGTGAAGCTGGTGTTCCGTTTTTCTCAATCTCTGGTTCTGAGTTTGTTGAGATGTTTGTTGGTATTGGTGCTTCCCGAGTTCGTGATTTATTCAAGAAGGCCAAAGAGAATGCTCCTTGTATTGTTTTTGTTGACGAAATTGATGCTGTGGGGAGGCAACGGGGTGCTGGAATTGGTGGAGGGAATGATGAAAGGGAACAGACCCTTAACCAACTTTTGACAGAAATGGATGGATTTGAGGGTAATACTGGAATCATTGTCATTGCAGCAACCAACAGGGCGGACATTCTTGATTCCGCATTATTGAGACCGGGACGGTTCGATAGACAGGTATCAGTTGACATTCCAGACATTCGGGGAAGGACTGAAATACTAAAGGTTCATGCTGCTATATTAACTGGTCGGCGCGGAAAGACGGAAATTTCATCAAAAGAGATTGACGATTCTATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTGATGACAGATGGGAAGAGCAAGAATCTAGTGGCATATCATGAAGTTGGGCATGCCATTTGTGGAACTTTGACTCCTGGTCATGATCCTGTACAAAAGGTAACCCTTGTTCCCCGTGGGCAAGCTCGGGGTCTCACTTGGTTCATTCCTTCTGATGACCCAACACTAATCTCCAAACAACAACTCTTTGCAAGAATTGTTGGTGGACTCGGCGGAAGAGCAGCAGAGGAAATTATTTTTGGTGAGCCCGAGGTTACAACTGGAGCAGCTGGTGATTTGCAGCAAATAACCAGTTTGGCTAAACAGATGGTAATCACATTTGGAATGTCCGATATTGGTCCTTGGTCGCTTATGGACGGCTCAGGTCAAAATGCAGATGTTATAATGAGAATGATGGCTAGAAACTCAATGTCAGAAAAGCTTGCTGAAGACATTGATTTTGCTATCAAGAAGCTCTCAGATGAAGCATATGAAATTGCTTTGAAGCATATAAGGAACAACCGTGAGGCCATCGATAAAATTGTGGAAGTCCTACTGGAAAAAGAGACAATTACCGGAGACGAATTCAGAGCTCTCCTTTCTGAGTTCGTTGAAATTCCACCCAAAAATGCGGTCTCTCCTTCAACTCCCTCACCAGTTTCTGTTTGA 1983 0.4372 MAASLACLIGNSLSTHSNKVNIHKDINGRHIFFSWGHSLLKRASKTILVKGKASSDQREHEGRRGFLKLLNLTVGLPALLGSAKAYADEQGVSSSKMSYSRFLEYLDKDRVKKVDLYENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFRQNNINFAAHNAEEESDSLFSNLIGNLAVPVIVIGGLFLLSRRASGGRAGPGSGFPFAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFVEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGIGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVSVDIPDIRGRTEILKVHAAILTGRRGKTEISSKEIDDSIDRIVAGMEGTVMTDGKSKNLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEIIFGEPEVTTGAAGDLQQITSLAKQMVITFGMSDIGPWSLMDGSGQNADVIMRMMARNSMSEKLAEDIDFAIKKLSDEAYEIALKHIRNNREAIDKIVEVLLEKETITGDEFRALLSEFVEIPPKNAVSPSTPSPVSV 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09112 660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 440 IPR027417 -
Vifa1g09112 660 Pfam ATPase family associated with various cellular activities (AAA) 267 398 IPR003959 GO:0005524|GO:0016887
Vifa1g09112 660 SMART AAA_5 263 402 IPR003593 GO:0016887
Vifa1g09112 660 SUPERFAMILY FtsH protease domain-like 449 648 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vifa1g09112 660 Gene3D - 213 418 IPR027417 -
Vifa1g09112 660 FunFam ATP-dependent zinc metalloprotease FTSH 6 chloroplastic 475 647 - -
Vifa1g09112 660 ProSitePatterns AAA-protein family signature. 370 388 IPR003960 GO:0005524|GO:0016887
Vifa1g09112 660 Gene3D Peptidase M41 444 643 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vifa1g09112 660 FunFam ATP-dependent zinc metalloprotease FTSH chloroplastic 91 171 - -
Vifa1g09112 660 CDD RecA-like_FtsH 228 398 - -
Vifa1g09112 660 Pfam Peptidase family M41 448 636 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vifa1g09112 660 Gene3D - 91 175 - -
Vifa1g09112 660 PANTHER METALLOPROTEASE M41 FTSH 68 414 - -
Vifa1g09112 660 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 19 649 IPR005936 GO:0004176|GO:0004222|GO:0016020
Vifa1g09112 660 FunFam ATP-dependent zinc metalloprotease FtsH 217 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09112 Vifa-Chr1 1443451022 1443453950 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09112 144 638 Miscellaneous Gene Families AT5G53170 42.589 1.15e-118 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09112 K03798 - tcc:18609064 1058.9