Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09007 ATGGCAACAGAGAGTCCAATTAGAATATCAGAAGCCGGGGGGAAATGGCCTTCTCATATTGATGCGTCAGCTTTTGGCACACCACCTCATAACATGGGGACAGAAGATTTGGGTATTCTGTTGAAGGGCCATAGGTTCCGTGGTAGTGCAAAGGACGTCGCACCCAATCGTAGTGGCAGTGCACCTCCCAGCATGGAAGGCTCATTTCTGGCCATAGAAAACCTACTACCACTTCAGAACACCCAGGATGCAAGCTTGACAACTCTGAGCAGGGCTGTGAAAAATTGTGAATCTGAAGAACAGTTACGGGCTGATCCAGCTTATTTGGCATATTACAGTTCAAATGTCAACCTAAACCCTAGACTTCCTCCTCCGCTAACTTCCTGGGAAAACCGCCATATAGGGCACCATATTGGTAGCTCTAGAAATAATTGGGGATTGCCTTCTGCAGATCATAGAAGTAAAAATTCTTTACATTTACCGCAAGCAACTCTTTCAACACACAAGGAGGAGTCTGAGGATGATTCCACCCAACAACAGACACATGAAAACAAATCAGTTAACATACGTGGAGTATGGCGTAGACAAGATGCAGCTTCATCGGCATCACAGCAAAAAAACGTGGTTGATTTAATTCAGGAGGACTTTCCTCGCACCATGTCACCTGTATATAATATGTCTCTTTCTGTAAGTCATGGACTGGTGGATAAACCAATTGAATTAGAAGCTGCTTCCAGTTCTTCTCATGACCCTCATGTTACTGCAGTAGAGTCTGCTAAACCTACTGCAGGTGCGGATGATATTAGGGTGTCATCAAGTGTCGATGTCCACTCCCCTGTTGCAAGCTCTTCAACTCTTGGATCCGCAGCTAGCATGGGTTTTAGTAACATAGATGTTGCAACTGTTGCATATCAATTAAAGACTCTTAATGTATCCAATCTTGCAAATTCAGAAAGCCTGAGTTATGAAGAAAAATTGAAGACAAGCTACCAGAATAATATGATGCAACGGCAGGTATTCCCGCAACAAAGCAATCCGAGTGAAGTTCCTAGTACTAATCCTCAAAGTGTAGACAATGCTTACTTTGGAAGGGAACAGTTTGCTCTTAATTCAAGCAAGTTGTCTGATGTTCAGCCACTACTTCAGTCATCTGGGTTTACACCTCCTCTATATGCCACAGCAGCAGCTTATATGACCTCTGTAAATCCGTTTTACACTAATATGCAAGCCTCAGGCACATATGCTCCTCAATATATTGGTGGATACACTTTAAATCCCACAGCTATTCATCCATATATTTCTTCCTACCCTCATGGTGCTGTGCCATTTGTTGTTGATGGGGCTACTAGTTCTAGTTATGCCCCGCTAACACCAGGGGTTTCGACCGGGGGTAGTATTTCACATGGAGCAGAAATGGTACAAGCAAACAAGTACCTCGGGCAATTTGGATATCCTGTACAGCCTACTTATGGTGATCCTATTTACATGCAATACAATCAACAAGCTTTTGTAGAGGGATTTGGTATTTCTGGTCATTTTGACCCACATGCACCTAGAGCAAGTGGTGTTAACCAAATGAATCCTTATGATTCACAAAAAAGGCCTGGTACCGGTGCTTATTTGGATGATAAAAAATTACACGAACAGAGAACTGGTGCTAATATGAACTCGAGAAGAGGTGGATTATCAGTTCCTAGTTATTTTGGACATATGCCAAACACTGGCTTTGTAATGCAGTATCCAAGTTCACCACTTTCTAGTCCAGTTTTGTCTGGATATCCAGAAGGAAGTCCTGGCCTTTCAGGAGGTAGAAATGAAATGAAACCTTTCCCAGCTTCTGGTAGAAATGGAGGCATGTTATCTGGATGGCATGGTCCAAGGTCTTTTGACAGTGCTCAAGACCCCAAGATTGTTAACTTCCTCGAGGAGTTGAAATCTGGCAAAGGTCGCAGATTTGAGCTATCTGATATTATTGGACATATCGTTGAATTTAGCGCTGATCAGCATGGAAGTCGATTTATACAACAGAAGTTGGAAAGTTGTGGTGTTGAAGAGAAGGCATTGGTGTTCAAAGAGGTTCTTCCACATGCTTCTAAATTAATGACTGATGTATTCGGTAACTATGTAATACAGAAGTTTTTTGAGTATGGAAATCCTGAACAGAGGAAGGAACTTGCAGATAAACTTGCTGGTCAGATACTGCCTTTGAGTTTGCAAATGTATGGCTGTCGAGTAATCCAAAAGGCACTCGAGGTTATTGAGCATGAACAGAAAGCTCAGCTTGTTCGTGAGCTAGATGGGAATATCATGAGATGTGTTCGGGATCAAAATGGGAATCATGTAATACAGAAATGCATTGAATCTATACCCACCCAAAAAATTGGCTTTATACTATCAGCATTTCGTGGTCAAGTTGCTAATTTATCAATGCATCCCTATGGTTGTCGAGTCATTCAGAGAATTCTAGAGCATTGTACAGATGAGGTTCAGTGTCAGTTTATCGTAGATGAAATATTGGAGTCAGTTTGTTCTCTTGCTCAGGACCAGTATGGTAATTATGTTACCCAGCATGTGTTGGAGAGAGGAAAATCTCAAGAAAGGAGCCAAATAATCAGCAAGCTGTCAGGACATGTTGTTCAATTGAGTCAGCATAAGTTTGCTTCAAATGTTGTGGAGAAATGTCTGGAGTATGGTGATCCCTCTGAACGGGAGTTGTTTATTGTAGAGATTATTGGGCCTGATGGGCAAAATGATAATTTATTGACGATGATGAAAGACCAATTTGCTAACTACGTGATCCAGAAGGTTATTGACATATGTTCTGATAATCAGCGTGCAATGTTACTCTCTCACATAAGAGTCCATGCTAATGCTTTGAAGAAATATACTTACGGAAAACACATTGTGGCTCGCTTGGAACATCAATTTGGAGAGAATCAAACACCCAGTTCATGA 2955 0.4179 MATESPIRISEAGGKWPSHIDASAFGTPPHNMGTEDLGILLKGHRFRGSAKDVAPNRSGSAPPSMEGSFLAIENLLPLQNTQDASLTTLSRAVKNCESEEQLRADPAYLAYYSSNVNLNPRLPPPLTSWENRHIGHHIGSSRNNWGLPSADHRSKNSLHLPQATLSTHKEESEDDSTQQQTHENKSVNIRGVWRRQDAASSASQQKNVVDLIQEDFPRTMSPVYNMSLSVSHGLVDKPIELEAASSSSHDPHVTAVESAKPTAGADDIRVSSSVDVHSPVASSSTLGSAASMGFSNIDVATVAYQLKTLNVSNLANSESLSYEEKLKTSYQNNMMQRQVFPQQSNPSEVPSTNPQSVDNAYFGREQFALNSSKLSDVQPLLQSSGFTPPLYATAAAYMTSVNPFYTNMQASGTYAPQYIGGYTLNPTAIHPYISSYPHGAVPFVVDGATSSSYAPLTPGVSTGGSISHGAEMVQANKYLGQFGYPVQPTYGDPIYMQYNQQAFVEGFGISGHFDPHAPRASGVNQMNPYDSQKRPGTGAYLDDKKLHEQRTGANMNSRRGGLSVPSYFGHMPNTGFVMQYPSSPLSSPVLSGYPEGSPGLSGGRNEMKPFPASGRNGGMLSGWHGPRSFDSAQDPKIVNFLEELKSGKGRRFELSDIIGHIVEFSADQHGSRFIQQKLESCGVEEKALVFKEVLPHASKLMTDVFGNYVIQKFFEYGNPEQRKELADKLAGQILPLSLQMYGCRVIQKALEVIEHEQKAQLVRELDGNIMRCVRDQNGNHVIQKCIESIPTQKIGFILSAFRGQVANLSMHPYGCRVIQRILEHCTDEVQCQFIVDEILESVCSLAQDQYGNYVTQHVLERGKSQERSQIISKLSGHVVQLSQHKFASNVVEKCLEYGDPSERELFIVEIIGPDGQNDNLLTMMKDQFANYVIQKVIDICSDNQRAMLLSHIRVHANALKKYTYGKHIVARLEHQFGENQTPSS 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09007 984 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 108 974 - -
Vifa1g09007 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 800 836 IPR001313 GO:0003723
Vifa1g09007 984 MobiDBLite consensus disorder prediction 166 180 - -
Vifa1g09007 984 MobiDBLite consensus disorder prediction 165 206 - -
Vifa1g09007 984 SMART pum_5 915 950 IPR001313 GO:0003723
Vifa1g09007 984 SMART pum_5 764 799 IPR001313 GO:0003723
Vifa1g09007 984 SMART pum_5 800 836 IPR001313 GO:0003723
Vifa1g09007 984 SMART pum_5 692 727 IPR001313 GO:0003723
Vifa1g09007 984 SMART pum_5 837 872 IPR001313 GO:0003723
Vifa1g09007 984 SMART pum_5 728 763 IPR001313 GO:0003723
Vifa1g09007 984 SMART pum_5 656 691 IPR001313 GO:0003723
Vifa1g09007 984 SMART pum_5 873 908 IPR001313 GO:0003723
Vifa1g09007 984 SUPERFAMILY ARM repeat 641 973 IPR016024 -
Vifa1g09007 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 909 950 IPR001313 GO:0003723
Vifa1g09007 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 728 763 IPR001313 GO:0003723
Vifa1g09007 984 FunFam Pumilio homolog 1 isoform 2 635 983 - -
Vifa1g09007 984 MobiDBLite consensus disorder prediction 1 31 - -
Vifa1g09007 984 Gene3D - 637 981 IPR011989 -
Vifa1g09007 984 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 636 976 IPR033133 GO:0003723
Vifa1g09007 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 656 691 IPR001313 GO:0003723
Vifa1g09007 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 837 872 IPR001313 GO:0003723
Vifa1g09007 984 CDD Pumilio 651 972 IPR033712 GO:0003723
Vifa1g09007 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 873 908 IPR001313 GO:0003723
Vifa1g09007 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 764 799 IPR001313 GO:0003723
Vifa1g09007 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 692 727 IPR001313 GO:0003723
Vifa1g09007 984 Pfam Pumilio-family RNA binding repeat 804 839 IPR001313 GO:0003723
Vifa1g09007 984 Pfam Pumilio-family RNA binding repeat 697 729 IPR001313 GO:0003723
Vifa1g09007 984 Pfam Pumilio-family RNA binding repeat 842 874 IPR001313 GO:0003723
Vifa1g09007 984 Pfam Pumilio-family RNA binding repeat 919 952 IPR001313 GO:0003723
Vifa1g09007 984 Pfam Pumilio-family RNA binding repeat 775 791 IPR001313 GO:0003723
Vifa1g09007 984 Pfam Pumilio-family RNA binding repeat 660 694 IPR001313 GO:0003723
Vifa1g09007 984 Pfam Pumilio-family RNA binding repeat 732 765 IPR001313 GO:0003723
Vifa1g09007 984 Pfam Pumilio-family RNA binding repeat 877 911 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09007 Vifa-Chr1 1429023496 1429032057 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09007 K17943 - gmx:100811036 1595.48