Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08893 ATGTGGTTTTCCTTCTGGAGATCCAAAGATCGTTTTTCCTTGGATCAACTTAGGTACTTAGCTGATCAGTTAACAAAAGTTCAAATAGTTAATGAGGTTAATAAGGATTTTGTTATTGAGGCACTGAGATCAATTGCGGAGTTGATAACATATGGTGACCAACACGACCCAAGCTTTTTTGAATTTTTCATTGAAAATCAAGTTGTGGGGGATTTTGTACGTGTTCTAAAACTTAGCAGGACTATTAGTATTCCACTTCAGTTGCTACAAACTGTTAGCATTATGATCCAAAACCTTCAAAGTGAACATGCTATATACTATATGCTTAGTAATGAACATATGAACTTCCTAATTACATACTCATTTGATTTCCGCAATGAAGAGCTATTGTCATATTACATATCATTTTTAAGAGCGATAGGTGGGAAATTAAACAAGAATACTATTTCTTTGCTGGTGAAGACTCGCAACGATGAAGTAGTTTCATTTCCACTATATGTTGAGGCGATACGCTTTGCCTTTCATGAGGAGAACATGATTCGCGCTGCTGTGCGTGCTGTGACCCTTAATGTTTACCATGTTGGAGATCACTCTGTTAATAGATATATAACTAGTGCACCTCACACAGATTACTTCTCAAATCTGGTTTCTTTTTTTAAGAAGCAGTGTATGGATTTAAACAAACTGATCTCTGATACGCAGAAAAATCCAGGCCCAGACTCAAAGGCTACCATTACTGCTGCTGTAGATGAAATTGAGGATAATCTATATTACTTTAGTGATGTGATCTCTGCGGGAATTCCTGATGTTGAAAGGTTAATAACAGACAGCATTCTGACGCTTCTGATTTTTCCAGTACTTCTTCCTTCTCTAAGGATAGTGGCTGCTAATCATGTTGACCAGGATATACAAAGTGATGTTGTCACTTCTCTCTACTTACTTTGTTGCATCTTGAGGATAGTCAAGATCAAAGATTTGGCAAATACAATAGTTGCTGCACTTTATTACCCCTTAGAGTCCCTTACAAAATGTTTTGGGGGTCAAGTCAATGGAATGGTACCTGATAATGGTTTTACTTCTGAAGGCGACGGGATAGATAATAATAATAATAATAATCTTACCAAGAATAATAAAAAAGGCTTGGTAGTCAATGTTCCATGCTCACCTAGTTCTTCAGGTTTTCATCCACAGAGTATCACCATGCTAAATAATGGTAGCAGTTCGAATGTGGCTTTGAGAGAAGTTTTGCTTGAATATGTAACTGATGGGGTTGATTTACAAGTTTTGGGTGCCTTGAGTGTGCTTGCCACTCTACTGCAAACTAAAGAACTTGATGAGTCAATGCTAGACGGGCTTGGAATTCTTCCACAACGCAAACAGCAAAAAAAGCTCTTATTGCAAGCTTTGGTTGGCGAGGCTTCAGGGGAAGAACAACTTTTTTCTTCTGAAACTAGTTTGACAAGAGATGGCATTGCATGTGAGCTTGATGTTTATCTTGAAAAGATCAAGGAGCAATATGGGGTATCTTTTCAGCTTCCAAATGTGATACCAAGCCCTCGTGTACCTAGATTTCAGGTGCTCGATGCATTAGTGAGCCTCTTTTGCCGTTCTAATATATCTGCAGAGACACTATGGGGTGGTGGCTGGCTTTTACGCCAGTTGTTTCCTTACAGTGAATCAGAATTCAACAACCACCACTTGAAATTGCTGAAAATTTCATACGAGAATTCTGCTTGTGCTCTTGAAAAGGAAGTTAAAGGTTTCTGGCCTGACCTTCTTATTACCGTTCTTTGTGATGAATGGAGAAGGTGCAAAAGAGCAATGGAGTCCTCATCCCCACCAAAAGAACCAAAGTGCATGCTTTTTCCGCCTAGGATGCTCTTTTCAGAAGAAGATATACCCGAGGGATCATCATTTACTGCTGGAGAAAGAATGCATGAGTTGGTGAAGGTATTTGTACTTCTGCACCAACTTCAGATATTCACTCATGGTAGAACTTTGCCTGAGCAACCTCTTATTTATCGTCCTTATGATCATCGTATGGATTCTCGAGCCCAGACTTCTGGACTTGTGTCAGTCCCAAAGCCAGGCACTGAAATGAACCTTGTAAATGCAGTGCCTTGTAGAATTGCTTTCGAGAGGGGCAAAGAGCGCCATTTTTGTTTTCTAGCAATCTCTGTAGGAACATCTGGTTGGCTTGTGCTTGCAGAAGAATTGCCTCTGAAGAAGCCCTATGGAATTGTTCGGGTTGCTGCACCTCTGTCAGGGTGCAATCCCAGGATTGACGATAAGCATTCAAAATGGTTACACCTGCGGATCCGGCCTTCTGCTTTACCTTTTCTGGATCCTCTCAAGTACAGTTCACATGGGAAGTTAAAGACAAAAGCTTTTGTTGATGGAAGATGGATATTGGCGTTCAGGGACGAGGAGTCGTGCAAAAATGCTTTTCTCATGATTCTTGAAGAGATTAATTATCTATGCGATGAGGTTCATAGAAGAATAAAACCTTTGCTCAAGCTTGAAACCGTGCTAGACATGTCAAGTTCGTCTGCTCTTGTTTCAGAGGATTCCTCTTCACATACAACACCTCCCAATTCATTGTAA 2604 0.4002 MWFSFWRSKDRFSLDQLRYLADQLTKVQIVNEVNKDFVIEALRSIAELITYGDQHDPSFFEFFIENQVVGDFVRVLKLSRTISIPLQLLQTVSIMIQNLQSEHAIYYMLSNEHMNFLITYSFDFRNEELLSYYISFLRAIGGKLNKNTISLLVKTRNDEVVSFPLYVEAIRFAFHEENMIRAAVRAVTLNVYHVGDHSVNRYITSAPHTDYFSNLVSFFKKQCMDLNKLISDTQKNPGPDSKATITAAVDEIEDNLYYFSDVISAGIPDVERLITDSILTLLIFPVLLPSLRIVAANHVDQDIQSDVVTSLYLLCCILRIVKIKDLANTIVAALYYPLESLTKCFGGQVNGMVPDNGFTSEGDGIDNNNNNNLTKNNKKGLVVNVPCSPSSSGFHPQSITMLNNGSSSNVALREVLLEYVTDGVDLQVLGALSVLATLLQTKELDESMLDGLGILPQRKQQKKLLLQALVGEASGEEQLFSSETSLTRDGIACELDVYLEKIKEQYGVSFQLPNVIPSPRVPRFQVLDALVSLFCRSNISAETLWGGGWLLRQLFPYSESEFNNHHLKLLKISYENSACALEKEVKGFWPDLLITVLCDEWRRCKRAMESSSPPKEPKCMLFPPRMLFSEEDIPEGSSFTAGERMHELVKVFVLLHQLQIFTHGRTLPEQPLIYRPYDHRMDSRAQTSGLVSVPKPGTEMNLVNAVPCRIAFERGKERHFCFLAISVGTSGWLVLAEELPLKKPYGIVRVAAPLSGCNPRIDDKHSKWLHLRIRPSALPFLDPLKYSSHGKLKTKAFVDGRWILAFRDEESCKNAFLMILEEINYLCDEVHRRIKPLLKLETVLDMSSSSALVSEDSSSHTTPPNSL 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08893 867 PANTHER UNCHARACTERIZED 1 845 IPR039272 -
Vifa1g08893 867 Pfam Uncharacterised conserved protein 42 192 IPR019155 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08893 Vifa-Chr1 1408624768 1408639425 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08893 K19513 - gmx:100786267 1335.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08893 1 1408624768 1408639425 Vifa1g08893 1 1408624768 1408639425 ECH