Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08833 ATGGAGAGAAAGTTTGACATGGTTTTGAGAAGAATTTTGATCTCTGGTTCAATCCACTATCCAAGAAGCACACCTCAGATGTGGCCAGATTTAATTCAAAAGGCCAAAGATGGAGGTGTTGATGTGATTGAAACATATGTGTTTTGGAATGGACATGAACCTTCTCAAGGAAATTATTACTTTGAAGATAGGTTTGATTTGGTTAAGTTTGTGAAAGTGGTTCAACAAGCTGGACTTTATGTTCACTTGCGTATTGGTCCCTATGTTTGCGCGGAATGGAATTTCGGGGGATTTCCTGTTTGGCTAAAGTATGTACCAGGTGTTGCTTTCAGAACCGACAACGAGCCGTTCAAGGCTGCAATGCAAAAATTCACTGCTAAGATTGTCAGTATTATGAAAGCAGAGAGATTGTTTCAAAGCCAAGGTGGTCCAATTATTTTGTCTCAGATTGAGAATGAGTATGGACCGGTGGAATGGGAAATTGGTGCTCCTGGAAAAGCTTATACGAAATGGGCTGCTCAAATGGCTGTTGGTCTAGACACGGGTGTACCGTGGATTATGTGTAAACAAGAAGATGCTCCTGATCCTATTATTGATACCTGCAATGGATATTACTGCGAAAACTTCTCTCCCAACAAGAACTACAAACCCAAAATGTGGACTGAAAACTGGACTGGCTGGTACACTGATTTTGGTAGTGCTGTCCCTTATAGACCAGCAGAAGACTTGGCATTCTCAGTTGCCAGATTCGTACAGAATCGCGGCTCATATGTTAACTACTATATGTATCATGGAGGAACTAATTTTGGAAGGACAACTAGTGGCCTTTTCATTGCCACAAGCTACGACTACGATGCTCCTATCGATGAATATGGACTTATAAACGAACCAAAATGGGGGCATCTAAGAGATTTACATAAAGCGATAAAGCAATGCGAGTCAGCTTTGGTGTCCGTGGATCCGACAGTGTCATGGCCCGGAAAAAACCTTGAGGTGCATCTTTACAAGACAAGCTTTGGTGCATGTGCTGCATTCCTTGCAAATTACGACACCTCGTCGTGGGCAAAAGTTCCATTTGGAAATGGCCAGTATGACCTCCCACCCTGGTCTATCAGTATTCTTCCTGACTGCAAAACTGAGGTTTTCAACACTGCAAAGGTTGGTGCTCCAAGGTTCCATAGAAAGATGACTCCTGTAAACAGTGCGTTTAATTGGCAGTCGTACAATGAACAACCTGCCGCCTCCGGTGGAGAAAGTTCGATCACAACAGCTGCACTTTTGGAGCAGGTCGGTGTCACTCGCGATTCGTCAGATTATTTGTGGTACATGACAGATGTCAACATTAGTCCTAATGAAGCTTTCTTAAAGAATGGCCAATATCCTGTTCTTACAGCAATGTCGGCCGGCCATGTTCTGCATGTTTTTGTTAACGGTCAACTTTCAGGAACTGCATACGGAGGATTGGATAATCCTAAATTAACATTTAGCAGTGGTGTGAAGCTATGGGCTGGCAATAACAAGATTTCTCTACTTAGTGTTGCAGTCGGTCTCTCGAATGTTGGCTTACATTACGAAACATGGAATGTTGGAGTGTTAGGCCCGGTAACGTTAAAGGGTCTAAATGAGGGGGCAAGAGACTTGTCTAAACAAAAATGGTCTTACAAGACTGGACTGAAAGGTGAATCTTTGAACCTTCATACCGCAACTGGAAGTTCCGCGGTAAAATGGTCACAAGGATCATTTTTGTCTAAAAAGCAGTCTCTCACATGGTACAAGACAACTTTCAGCGCGCCCGCTGGAAACGATCCGTTGGCTCTAGATATGAGTAGCATGGGAAAGGGTGAAATATGGGTAAACGGTAAGAGCATTGGTCGCCATTGGCCCGGATATATAGCACGTGGTAATTGTGGTAGTTGTAATTATGCCGGAACATTTACCGATAGTAAATGCCGAACAAATTGCGGACAACCAACTCAAAAATGGTATCATATTCCTCGCTCGTGGCTAAACTCAGGCGGGAACTTCTTGGTTGTGTTGGAAGAATGGGGAGGTGACCCTACCGGAATTTCGTTGGTGAAAAGAACATAA 2088 0.4344 MERKFDMVLRRILISGSIHYPRSTPQMWPDLIQKAKDGGVDVIETYVFWNGHEPSQGNYYFEDRFDLVKFVKVVQQAGLYVHLRIGPYVCAEWNFGGFPVWLKYVPGVAFRTDNEPFKAAMQKFTAKIVSIMKAERLFQSQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAAQMAVGLDTGVPWIMCKQEDAPDPIIDTCNGYYCENFSPNKNYKPKMWTENWTGWYTDFGSAVPYRPAEDLAFSVARFVQNRGSYVNYYMYHGGTNFGRTTSGLFIATSYDYDAPIDEYGLINEPKWGHLRDLHKAIKQCESALVSVDPTVSWPGKNLEVHLYKTSFGACAAFLANYDTSSWAKVPFGNGQYDLPPWSISILPDCKTEVFNTAKVGAPRFHRKMTPVNSAFNWQSYNEQPAASGGESSITTAALLEQVGVTRDSSDYLWYMTDVNISPNEAFLKNGQYPVLTAMSAGHVLHVFVNGQLSGTAYGGLDNPKLTFSSGVKLWAGNNKISLLSVAVGLSNVGLHYETWNVGVLGPVTLKGLNEGARDLSKQKWSYKTGLKGESLNLHTATGSSAVKWSQGSFLSKKQSLTWYKTTFSAPAGNDPLALDMSSMGKGEIWVNGKSIGRHWPGYIARGNCGSCNYAGTFTDSKCRTNCGQPTQKWYHIPRSWLNSGGNFLVVLEEWGGDPTGISLVKRT 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08833 695 Gene3D - 415 550 - -
Vifa1g08833 695 SUPERFAMILY Galactose-binding domain-like 551 691 IPR008979 -
Vifa1g08833 695 PANTHER BETA-GALACTOSIDASE RELATED 10 694 IPR001944 GO:0004553|GO:0005975
Vifa1g08833 695 Gene3D - 551 695 - -
Vifa1g08833 695 FunFam Beta-galactosidase 414 551 - -
Vifa1g08833 695 Gene3D Glycosidases 9 312 - -
Vifa1g08833 695 FunFam Beta-galactosidase 559 695 - -
Vifa1g08833 695 PRINTS Glycosyl hydrolase family 35 signature 28 46 IPR001944 GO:0004553|GO:0005975
Vifa1g08833 695 PRINTS Glycosyl hydrolase family 35 signature 140 155 IPR001944 GO:0004553|GO:0005975
Vifa1g08833 695 PRINTS Glycosyl hydrolase family 35 signature 613 629 IPR001944 GO:0004553|GO:0005975
Vifa1g08833 695 PRINTS Glycosyl hydrolase family 35 signature 83 102 IPR001944 GO:0004553|GO:0005975
Vifa1g08833 695 PRINTS Glycosyl hydrolase family 35 signature 256 271 IPR001944 GO:0004553|GO:0005975
Vifa1g08833 695 PRINTS Glycosyl hydrolase family 35 signature 7 24 IPR001944 GO:0004553|GO:0005975
Vifa1g08833 695 PRINTS Glycosyl hydrolase family 35 signature 276 292 IPR001944 GO:0004553|GO:0005975
Vifa1g08833 695 PRINTS Glycosyl hydrolase family 35 signature 586 600 IPR001944 GO:0004553|GO:0005975
Vifa1g08833 695 PRINTS Glycosyl hydrolase family 35 signature 219 234 IPR001944 GO:0004553|GO:0005975
Vifa1g08833 695 SUPERFAMILY (Trans)glycosidases 11 313 IPR017853 -
Vifa1g08833 695 FunFam Beta-galactosidase 261 389 - -
Vifa1g08833 695 Pfam Glycosyl hydrolases family 35 10 308 IPR031330 -
Vifa1g08833 695 SUPERFAMILY Galactose-binding domain-like 371 541 IPR008979 -
Vifa1g08833 695 Pfam Beta-sandwich domain in beta galactosidase 316 387 IPR041392 -
Vifa1g08833 695 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 142 154 IPR019801 GO:0004553|GO:0005975
Vifa1g08833 695 FunFam Beta-galactosidase 6 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08833 Vifa-Chr1 1398119768 1398124353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08833 10 694 Glycoside Hydrolase AT3G13750 70.742 0.0 1042
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08833 - - gmx:100810170 1234.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08833 1 1398119768 1398124353 Vifa1g08833 1 1398119768 1398124353 ECH