Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08807 ATGGAAACTCCTCCGTCGCAGCAAGGCGTAGTAAAGAAGAAGGAAACACGCGGTCGAAAACCCAAACCAAAAGACGATCAACACCAACTAACACCTGCCAAAGCACTGAAAGAAGCGAAAAAAGCGCAACAGCAACAGCAGCAACAACAGCAACAACAACAGCAGCAGCAACAACAACACCAAGCTACCGTAGACGAGAAATACACTCAATGGAAGTCTCTCGTTCCCGTTCTCTACGATTGGCTCGCGAATCATAACCTCGTTTGGCCTTCTCTCTCTTGCCGGTGGGGTCCTCAGCTTGAACAAGCTACTTATAAGAATCGACAGCGGCTTTATCTTTCGGAGCAGACTGATGGAAGTGTTCCGAATACGTTGGTGATTGCGAATTGTGAGGTTGTGAAAACTAGGGTTGCAGCTGCAGAGCATATTTCCCAGTTTAATGAAGAGGCTCGCTCTCCATTTGTGAAGAAGTACAAGACCATCATACATCCGGGCGAGGTGAACAGAATTAGGGAATTGCCGCAAAATTCTAAGATTGTGGCTACTCACACAGACAGCCCTGATGTTCTCATTTGGGACGTTGAAAGTCAACCTAACCGTCATGCTGTCCTTGGAGCTACAAACTCTCGTCCAGATTTGATATTGACCGGACACCAAGACAATGCTGAGTTTGCTCTTGCAATGTGCCCAACTGAGCCGTATGTCCTTTCAGGAGGAAAAGATAAAACAGTGGTATTGTGGAGTATTGAAGACCATGTAACATCTGCCGCCACAGACAAGTCTGGTGGATCCATTATCAAACCGAACTCTAAATTTGGGGAAGGCAATGACAAAACTGTTGATAGCCCTTCTGTCGGGCCAAGAGGTATCTACTCTGGGCACGATGATACTGTTGAAGATGTGGCCTTTTGCCCTTCTAGTGCGCAGGAGTTCTGTAGTGTTGGAGATGATTCTTGTCTCATATTATGGGATGCACGTGTTGGCTCTAGTCCTGTTGTTAAGGTTGAAAAAGCTCACAATGCCGATCTTCATTGTGTTGACTGGAATCCCCATGATGATAATCTGATTCTTACTGGGTCGGCAGATAATTCTGTTCGCTTGTTTGATCGGCGTAATCTCACCTCTAATGGGGTTGGGTCTCCTATTCATAAATTTGAGGCTCATAAAGCTGCTGTTCTCTGTGTTCAGTGGTCTCCCGACAAATCATCTGTATTTGGAAGTTCAGCAGAAGATGGTCTCTTAAACATTTGGGATTATGAGAAGGTTGGTAAAAAGATAGAGCGAGCTGGAAAAACAATAAACTCTCCTCCAGGGTTGTTTTTCCAACATGCTGGTCATAGAGACAAAGTTGTTGACTTCCACTGGAATGCATATGATCCATGGACAATTGTAAGTGTGTCTGATGATTGTGAAAGTACTGGTGGAGGGGGAACATTGCAGATATGGCGCATGAGTGATTTGCTCTATAGACCAGAGGATGAGGTTTTGGCAGAGTTGGAGAAATTCAAATCTCACGTGGTGGCTTGTGCGGCCAAGACCGATACATAA 1548 0.4541 METPPSQQGVVKKKETRGRKPKPKDDQHQLTPAKALKEAKKAQQQQQQQQQQQQQQQQQHQATVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKTRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHVTSAATDKSGGSIIKPNSKFGEGNDKTVDSPSVGPRGIYSGHDDTVEDVAFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRLFDRRNLTSNGVGSPIHKFEAHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERAGKTINSPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLLYRPEDEVLAELEKFKSHVVACAAKTDT 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08807 515 Pfam WD domain, G-beta repeat 289 324 IPR001680 GO:0005515
Vifa1g08807 515 Pfam WD domain, G-beta repeat 213 248 IPR001680 GO:0005515
Vifa1g08807 515 Pfam WD domain, G-beta repeat 379 418 IPR001680 GO:0005515
Vifa1g08807 515 Pfam WD domain, G-beta repeat 337 369 IPR001680 GO:0005515
Vifa1g08807 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 385 420 IPR001680 GO:0005515
Vifa1g08807 515 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 66 132 IPR022052 -
Vifa1g08807 515 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 385 420 - -
Vifa1g08807 515 MobiDBLite consensus disorder prediction 1 54 - -
Vifa1g08807 515 Gene3D - 39 501 IPR015943 GO:0005515
Vifa1g08807 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 336 369 IPR001680 GO:0005515
Vifa1g08807 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 333 IPR001680 GO:0005515
Vifa1g08807 515 Coils Coil 33 61 - -
Vifa1g08807 515 PANTHER WD40 REPEAT FAMILY 56 498 - -
Vifa1g08807 515 MobiDBLite consensus disorder prediction 258 285 - -
Vifa1g08807 515 SUPERFAMILY WD40 repeat-like 153 509 IPR036322 GO:0005515
Vifa1g08807 515 MobiDBLite consensus disorder prediction 19 35 - -
Vifa1g08807 515 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 336 369 - -
Vifa1g08807 515 FunFam WD-40 repeat-containing protein MSI4 40 501 - -
Vifa1g08807 515 MobiDBLite consensus disorder prediction 40 54 - -
Vifa1g08807 515 SMART WD40_4 154 193 IPR001680 GO:0005515
Vifa1g08807 515 SMART WD40_4 284 324 IPR001680 GO:0005515
Vifa1g08807 515 SMART WD40_4 329 369 IPR001680 GO:0005515
Vifa1g08807 515 SMART WD40_4 436 483 IPR001680 GO:0005515
Vifa1g08807 515 SMART WD40_4 378 418 IPR001680 GO:0005515
Vifa1g08807 515 SMART WD40_4 208 248 IPR001680 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08807 K10752 - gmx:100779302 958.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08807 1 1391762003 1391770266 Vifa1g08807 1 1391762003 1391770266 ECH