Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08792 ATGGCTATGAGTTACCCTTTTCCAATATACATCATTCTCTTAATAATAACCATACCACGTTTAATATCCACCGTTGGTAAAACCGAGCAATGGATATCTTCACTTCCAACAGAGTTATCCAAAACAAACAACAACATATCTGGAAAACTCATAACCGACCCAAAAGCCCTTGAAGAAGCTTCAAACGACTACGGCAACCTCGTACACGATTCACCAGCAGCTGTGTTTCGTCCGACAACTGTGAACGACATAGCAACTCTCATTAAGCTGTCGTTCAACAGTTCTGTCCCTTTTCGTATCGCCGCAAGAGGACAAGGCCATTCCACGCGCGGACAAGCCATGGCACGTGACGGCGTCGTGGTTGACATGAAAGGGTTAAGAGAAAGAGGAGATCGTGAAGTGGTTAAGAATAATATTAGAATGAAAAAAGCTAATGATGGGATTAAGGTTTTCGGAGATTCTAAGGTTGGATACTATGTTGATGTTGGTGGGGAACAACTGTGGATAGATGTTTTATATGAAACACTTGAGTATGGACTTGCACCTGTTTCTTGGACCGATTATCTTTACTTGACTGTTGGAGGAACACTCTCTAACGCTGGAATTAGTGGACAAACATTTCGTTATGGACCTCAAATTTCTAATGTTCATCAATTGGATGTTGTTACTGGAAAAGGAGAATTTGTAACATGCTCTAAACAGAAGAATTCAGAATTATTTCATGGTGTCCTTGGAGGTCTAGGACAATTTGGAATAATAACAAGGGCAAGAATTGCTCTTGAGGCAGCACCAAGGAGGGTAAAATGGATAAGACTTTTGTATAGTGATTTTGAAGTTTTTACGAAAGATCAAGAAAGTTTAATTTTAAGCAAAAATAGTAAGTTGGATTATTTGGAAGGAATTGTACTAATGCATCAAGGACCCATAAATAATTGGAGATCTTCTTTCTTCCCTTTAACCGACCATCAAAGGATACTTTCCCTAGTTACTCAACATAGGGTCCTCTATTGTTTGGAAATTGCCAAATATTATGATCACCACTATGAAAACACTCTCAACAAGGAAATTCAAACTTTGGTCCAAGGACTGAATTATATCCCCGGATTTTACTATGAAAAAAACGTATCTTTTGTTGAGTTCTTGAATAGAGTGAGAAGTGGAGAATTGAAACTTCAATCGCAAGGACTATGGGATGTTCCTCATCCATGGCTTAACATGTTTATACCAAAATCAAGAATAATGGATTTTAACTCAGGTGTTTTCAACAACATAATTCAAAAAAGAAACATCACCACAGGACCTGTCTTGGTTTATCCCATGAATAGAAACAAGTGGGACAATAAGATGTCAGCAACAATACCAGATGATGAGGATGAAATCTTTTATGCAGTTGGATTTTTGCACTCAAGTGGATTTGATAATTGGAAAGCCTTTGATGCACAAAACATAGAAATTTTGAAATATTGCAATGATGCTGAAATTAAGTATAAGTTATATCTTCCCCACTACAGCACACAGGAAGAGTGGAGAAACCATTTTGGACCTAAAAAATGGAAAAGTTTTGTACAAAGAAAATATAAGTTTGATCCAAGAATGATTCTATCACCTGGACAAAGAATCTTCAACAACAACTAA 1635 0.3731 MAMSYPFPIYIILLIITIPRLISTVGKTEQWISSLPTELSKTNNNISGKLITDPKALEEASNDYGNLVHDSPAAVFRPTTVNDIATLIKLSFNSSVPFRIAARGQGHSTRGQAMARDGVVVDMKGLRERGDREVVKNNIRMKKANDGIKVFGDSKVGYYVDVGGEQLWIDVLYETLEYGLAPVSWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVHQLDVVTGKGEFVTCSKQKNSELFHGVLGGLGQFGIITRARIALEAAPRRVKWIRLLYSDFEVFTKDQESLILSKNSKLDYLEGIVLMHQGPINNWRSSFFPLTDHQRILSLVTQHRVLYCLEIAKYYDHHYENTLNKEIQTLVQGLNYIPGFYYEKNVSFVEFLNRVRSGELKLQSQGLWDVPHPWLNMFIPKSRIMDFNSGVFNNIIQKRNITTGPVLVYPMNRNKWDNKMSATIPDDEDEIFYAVGFLHSSGFDNWKAFDAQNIEILKYCNDAEIKYKLYLPHYSTQEEWRNHFGPKKWKSFVQRKYKFDPRMILSPGQRIFNNN 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08792 544 ProSiteProfiles PCMH-type FAD-binding domain profile. 68 263 IPR016166 GO:0071949
Vifa1g08792 544 Pfam FAD binding domain 72 232 IPR006094 GO:0050660
Vifa1g08792 544 Gene3D - 123 265 IPR016169 -
Vifa1g08792 544 PANTHER GULONOLACTONE OXIDASE 32 542 - -
Vifa1g08792 544 FunFam Cytokinin dehydrogenase 2 266 499 - -
Vifa1g08792 544 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 264 541 IPR015345 GO:0009690|GO:0019139|GO:0050660
Vifa1g08792 544 FunFam Cytokinin dehydrogenase 1 140 265 - -
Vifa1g08792 544 SUPERFAMILY FAD-binding/transporter-associated domain-like 48 260 IPR036318 GO:0050660
Vifa1g08792 544 SUPERFAMILY FAD-linked oxidases, C-terminal domain 264 542 IPR016164 GO:0003824|GO:0050660
Vifa1g08792 544 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 72 107 IPR006093 GO:0016491
Vifa1g08792 544 Gene3D - 53 541 IPR016167 -
Vifa1g08792 544 Gene3D - 266 499 IPR016170 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08792 Vifa-Chr1 1388282929 1388287282 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08792 K00279 - gmx:100797928 792.341