Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08777 ATGGTGGTAAGGATTCGGCTATCGCGACTCGGATGCAAAAACAAACCATTCTACCGTGTGATGGCCGCCGATAGCAGATCTCCAAGAGACGGCAAACACCTCGAAGTTCTCGGTTACTACAATCCCTTACCCGTTCAAGATGGTGGCAAAAGAATGGGTATCAACTTTGACAGAGTCAAGTATTGGCTTTCTGTAGGAGCTCAACCTTCGAATCCTGTTGAGCGTCTTCTGTTTCGAGCAGGGTTACTTCCTCCACCGCCGACTGTGGCCATGGCACGCAAAGGTGGAGCTCGTGATACTCGTCCTGTTGATGCTTTAACTGGACGGGTCCTTGATCAACAAAAGCCTCCTAGTTCGAACAACAATGAAACCTCCGTAACTGAAAACCCGTGA 393 0.4936 MVVRIRLSRLGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPVQDGGKRMGINFDRVKYWLSVGAQPSNPVERLLFRAGLLPPPPTVAMARKGGARDTRPVDALTGRVLDQQKPPSSNNNETSVTENP 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08777 130 PANTHER 30S RIBOSOMAL PROTEIN S16 1 102 IPR000307 GO:0003735|GO:0005840|GO:0006412
Vifa1g08777 130 MobiDBLite consensus disorder prediction 112 130 - -
Vifa1g08777 130 Gene3D - 1 128 IPR023803 -
Vifa1g08777 130 Hamap 30S ribosomal protein S16 [rpsP]. 2 80 IPR000307 GO:0003735|GO:0005840|GO:0006412
Vifa1g08777 130 Pfam Ribosomal protein S16 9 70 IPR000307 GO:0003735|GO:0005840|GO:0006412
Vifa1g08777 130 NCBIfam 30S ribosomal protein S16 3 82 IPR000307 GO:0003735|GO:0005840|GO:0006412
Vifa1g08777 130 MobiDBLite consensus disorder prediction 87 130 - -
Vifa1g08777 130 FunFam 30S ribosomal protein S16 1 107 - -
Vifa1g08777 130 SUPERFAMILY Ribosomal protein S16 3 95 IPR023803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08777 Vifa-Chr1 1384974277 1384974896 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08777 K02959 - gmx:100305630 222.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08777 1 1384974277 1384974896 Vifa1g08777 1 1384974277 1384974896 ECH