Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08725 ATGGGTGCAGACCAAGTTGAAAACGGAGGAAGGGATGATTCTGATAAGGTGGAAGTGAACATATATCCTTTGAATTCTTACTATTTTGGATCCAAACATGCTATTCCTTCCAAAGATTACTCTCTTCACGACCATCTTCAAAGATTCAAGTCCAACTATGCTGCAAGTGGAATGCGAATTAATGTTGAAGCTGTTCTAATGGTTGAGTTGTTCAAACATCCGCATTTGTTGGTGTTGCAAATAAAAAATTCCATCTATAAACTTCCTGGTGGACGTTTGAGGCCAGGTGAATCAGATACTGATGGATTGAAGCGCAAGCTGGCAAAGAAGCTTTCTCTTGATGAAGATGAGGGACAATGGGAGGTAGGAGAGTGCCTTGGAATATGGTGGAGGTCTGATTTTGAAACATTGATGCACCCTTTCTTACCACCTAATGTCAAACATCCAAAGGAGTGTACAAAACTCTTCCTTGTAAAGCTTCCGGAAACTCAAAGATTCACTGTGCCAAAGAACATGAAGTTGCTTTCAGTTCCATTGTGCCAAATTCAAGAAAATCACAAGATATACGGGCCAATTGTATCTGCAGTCCCACAGCTACTCTCAAAGTTCACTTTCAATATGATCGGAATTTAA 633 0.4028 MGADQVENGGRDDSDKVEVNIYPLNSYYFGSKHAIPSKDYSLHDHLQRFKSNYAASGMRINVEAVLMVELFKHPHLLVLQIKNSIYKLPGGRLRPGESDTDGLKRKLAKKLSLDEDEGQWEVGECLGIWWRSDFETLMHPFLPPNVKHPKECTKLFLVKLPETQRFTVPKNMKLLSVPLCQIQENHKIYGPIVSAVPQLLSKFTFNMIGI 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08725 210 FunFam Pre-mRNA cleavage factor Im subunit 2 17 207 - -
Vifa1g08725 210 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 17 207 - -
Vifa1g08725 210 Pfam Nucleotide hydrolase 18 203 IPR016706 GO:0003729|GO:0005849|GO:0006378
Vifa1g08725 210 SUPERFAMILY Nudix 39 165 IPR015797 -
Vifa1g08725 210 PANTHER PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT 15 208 IPR016706 GO:0003729|GO:0005849|GO:0006378
Vifa1g08725 210 PIRSF CPSF-25 3 209 IPR016706 GO:0003729|GO:0005849|GO:0006378
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08725 Vifa-Chr1 1377855808 1377857226 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08725 K14397 - gmx:100791216 317.775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08725 1 1377855808 1377857226 Vifa1g08725 1 1377855808 1377857226 ECH