Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08644 ATGGGTTCTGATAGCAACAATTTGGGATTCTTGAAGGAGATCGGTTTGGGCGCCGCGAACATCGGCTCTTTCATCAATGGTCAGTGGAAAGCCAATGGTCCAACTGTTCAGTCCGTCAATCCTTCCACCAATCAGGTTATTGCTTCAGTGACTGAAGCGACGTTGGATGATTATGAAGAGGGATTGAGAGCTAGCAGTGAAGCAGCTAAGACATGGAGGAATATTCCGGCACCTAAAAGAGGTGAGATTGTAAGACAGATTGGGGAAGCATTGAGGGCTAAGTTGGATCCACTTGGTAGGTTGGTGGCTCTTGAGATGGGAAAAATTCTTGCTGAAGGAATTGGTGAGGTTCAGGAAATTATTGATATGTGTGATTATTCTGTTGGACTGAGCCGACAACTGAATGGATCAATTATCCCATCAGAACGTCCAGAGCATATGATGTTTGAGGTATGGAACCCTCTAGGAATCGTTGGTGTAATCACTGCTTTCAATTTTCCATGTGCTGTACTAGGATGGAATGCTTGCATTGCTCTAGTCGGTGGTAACACTGTTGTTTGGAAGGGCGCTCCAACTACTCCGTTGATCACTGTTGCTGTGACAAAGCTGATTGCTGAAGTTCTTGAGAGGAACAATTTACCCGGAGCAATATTTACCGCTCTTTGTGGAGGTGCTGATATTGGGGAGGCAATATCGAAAGACACACGCATTCCTTTGGTTTCATTTACTGGAAGCTCAAAGGTGGGCGCGCTGGTCCAGCAAACAGTGAGCCAAAGATTTGGCAAAGCCTTGCTTGAGTTAAGTGGTAACAATGCAATAATAGTCATGGATGATGCCGATATCACACTGGCTGTACGCTCTATTTTCTTTGCAGCTGTCGGTACTGCAGGTCAGCGTTGTACAACCTGCCGTAGACTGTATCTACACGAGAGTGTTTATGCAAACGTGCTTGAGCAACTTACCGGACTCTACAAACAAGTCAAAATTGGGAATCCTCTAGAGGAAGGGACTCTAGTTGGGCCTCTGCATACTCGTTCTTCTGTGGAAAATTTCAAGAATGGTATTTCTGCAATAAAATCTCAGGGAGGGAAGGTTGTAACAGGGGGATCTGTATTAGAGTCAGAAGGAAACTTTGTCGAGCCAACAATTGTTGAGATTTCTGCAGATGCTGCGGTAGTTAAAGAAGAACTGTTTGCTCCAGTTCTCTATGTTATGAAATTTAAGGATCTTGAAGAAGCAATTGCCTTGAACAATTCCGTACCTCAAGGATTGAGTAGTTCCATCTTCACACAAAAGCCTGCTACTATATTCAAATGGATAGGGCCAAGTGGGAGTGATTGTGGTATTGTAAATGTGAACATACCAACAAATGGAGCTGAGATTGGAGGTGCCTTTGGTGGAGAAAAGGCAACTGGTGGTGGTCGTGAAGCTGGAAGTGACTCGTGGAAGCAGTACATGCGCCGTTCTACATGTACCATCAATTATGGAAGTGAATTGCCATTAGCTCAGGGAATTAACTTTGGATAA 1527 0.4447 MGSDSNNLGFLKEIGLGAANIGSFINGQWKANGPTVQSVNPSTNQVIASVTEATLDDYEEGLRASSEAAKTWRNIPAPKRGEIVRQIGEALRAKLDPLGRLVALEMGKILAEGIGEVQEIIDMCDYSVGLSRQLNGSIIPSERPEHMMFEVWNPLGIVGVITAFNFPCAVLGWNACIALVGGNTVVWKGAPTTPLITVAVTKLIAEVLERNNLPGAIFTALCGGADIGEAISKDTRIPLVSFTGSSKVGALVQQTVSQRFGKALLELSGNNAIIVMDDADITLAVRSIFFAAVGTAGQRCTTCRRLYLHESVYANVLEQLTGLYKQVKIGNPLEEGTLVGPLHTRSSVENFKNGISAIKSQGGKVVTGGSVLESEGNFVEPTIVEISADAAVVKEELFAPVLYVMKFKDLEEAIALNNSVPQGLSSSIFTQKPATIFKWIGPSGSDCGIVNVNIPTNGAEIGGAFGGEKATGGGREAGSDSWKQYMRRSTCTINYGSELPLAQGINFG 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08644 508 CDD ALDH_F7_AASADH 26 496 - -
Vifa1g08644 508 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 265 272 IPR029510 GO:0016491
Vifa1g08644 508 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 269 460 IPR016163 GO:0016620
Vifa1g08644 508 Pfam Aldehyde dehydrogenase family 32 488 IPR015590 GO:0016491
Vifa1g08644 508 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 5 508 IPR044638 GO:0004029
Vifa1g08644 508 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 35 485 IPR016162 GO:0016491
Vifa1g08644 508 SUPERFAMILY ALDH-like 20 497 IPR016161 GO:0016491
Vifa1g08644 508 FunFam Alpha-aminoadipic semialdehyde dehydrogenase 269 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08644 Vifa-Chr1 1363624000 1363627810 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08644 1 508 Acyl Lipid Metabolism Gene Families AT1G54100 79.528 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08644 K14085 - gmx:100811186 882.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08644 1 1363624000 1363627810 Vifa1g08644 1 1363624000 1363627810 ECH