Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08640 ATGGAGAAGAAATCACCGTTACCGTTGAACAACGCCATTGCCAACAAGAGGAAAGAGCAATTATGTAGTAAGGACTCTCTCGTGAAGATTCTAAGATGGCACTTTAGGTATCCTGATTTTAGGGGTATGCAATTGGAAGCTATTCAAGCTGTCCTCTCAGGAAGAGATTGTTTTTGTCTTATGCCAACTGGAGGTGGCAAGTCAATGTGTTATCAAATTCCTGCATTGGCAAAAACAGGAATCGTGCTTGTAGTTTGTCCTTTAATAGCCTTAATGGAAAACCAAGTAATGGCGCTAAAGGAGAAAGGAATTGCTGCAGAGTTTCTTTCATCAACAAAAACGGCAGATGCAAAAAATAAGATTCACGAGGACCTTGATTCTGGAAAACCGTCTACAAGGCTGCTATATGTGACTCCAGAGTTGATAGCAACCCCAGGGTTTATGTCAAAGCTGAAAAAGATTTATTCCAGAGGGTTGCTAAGTCTCATTGCAATTGACGAGGCACATTGCATCTCTTCTTGGGGCCATGACTTCAGACCTAGCTACCGTAAGCTTTCAACTCTAAGAAGCCACCTACCAGATGTACCAATATTAGCTCTGACTGCTACTGCTGTTCCTAAGGTTCAGAAGGATGTAGTGGATTCCTTGCAGATGCAAAATGCATTAATGTTAAAGACTTCTTTTAATCGTCCTAATATATATTATGAAGTTAGATATAAAGATCTACTGGAAGATGCTTATGCTGATTTATCTGATACACTCAAATCTATGGGAGATGTCTGTGCGATAATTTATTGCCTTGAACGTTCCATGTGTGATGACTTGTCAGCTCATCTATCTCAAAACGGCATTTCTTGTGCAGCTTATCATGCAGGACTGAATAACAAAATGCGAACTTCCGTGCTAGATGATTGGATTTCTTCAAAAACAAAAGTTGTTGTTGCCACTGTTGCTTTTGGAAAGGATGTGAGAATTGTGTGCCACTTCAATATTCCGAAGTCAATGGAAGCATTTTATCAAGAGTCAGGCAGAGCTGGTCGTGATCAGTTGCCCTCTACAAGTCTCTTGTACTACGGAGTAGATGATCGGAAAAAGATGGAATTTATATTAAGAAACTCAGGTAGCAAGAAGTCACAATCATCAAATTCACAAGAAGAATCAACCAGAATGTCCCTAACTGCTTTCAATCAGATGCTTGAATATTGTGAGGGATCTGGATGTCGTAGGAAAAGGATTCTTGAGAGTTTTGGAGAGCAGGTAACAGCATCACTATGTGGAAAAACATGTGACTCCTGTAGATTCCCAAACTTAGTTGCCAGAAATTTGGAGGATCTCACTGCTGCTTGTTCTCTACGCCAGAAAGGAGGTTCTCGAGTTTTCATTACCAGTTCCACTGATGCAATTGTTGGAGAACAGTTATCTGAATTCTGGAATCGAGACGAGGAAGCAAGTGGATCAGAGGAAGATATTTCTGACTTAGATGACGGTAATGAGGTTGTCAACAATCTAGCCCGATCAAAGGGTCAATCCAGACTGGGAGTAAATGAAAAGCTTGATTTGCTACAGAGGGCAGAAGAAAAGTACTATCGAAATGAGAACACAAATAAACAGAGAAACAAAGTTGACAAGAATGCTATTTCTGATACATTACGAGGGGCAAGCAGGCAGAGATTACAAAATGCTTTAAAACAGGCTCAGGAACGGCTTGGTGGTGACTTAAAGATTGAAATGGAAGCTTCGGCATCTCTTCTCGAAGATGAGTGCTACAAGAAATATGGCAAGACTGGCAAATCATTCTATTATTCCCAAGTGGCAAGTACGATCAGATGGTTGACAACTACAAGTTCCGACAATCTAATGAACCGACTTCGTACAGTTGATGTTTCCTCATCATTGAATGTCTTCTCTGAAGTTGAACAATCCCTCACACCACCACCTGCTTCAGCTCCTTGTGCAAAAGAAGAAACTAGCAATGAGGTCTCAGGCAATGCTGTGACAGAAATAATCCCATGTGATGTGCCACTGGAAAATTCTTTTAATACAAACTTGCCACCAATACCATCCTTCTCCGAATTCGTAAACAGTAGGAAAGCGAAAAAAGACCAATCAGGTGACACAAAAAAACACTCATCAAGAGTAGAAAAGAAGATGAGGATACAGTAG 2163 0.4064 MEKKSPLPLNNAIANKRKEQLCSKDSLVKILRWHFRYPDFRGMQLEAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKTGIVLVVCPLIALMENQVMALKEKGIAAEFLSSTKTADAKNKIHEDLDSGKPSTRLLYVTPELIATPGFMSKLKKIYSRGLLSLIAIDEAHCISSWGHDFRPSYRKLSTLRSHLPDVPILALTATAVPKVQKDVVDSLQMQNALMLKTSFNRPNIYYEVRYKDLLEDAYADLSDTLKSMGDVCAIIYCLERSMCDDLSAHLSQNGISCAAYHAGLNNKMRTSVLDDWISSKTKVVVATVAFGKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSTSLLYYGVDDRKKMEFILRNSGSKKSQSSNSQEESTRMSLTAFNQMLEYCEGSGCRRKRILESFGEQVTASLCGKTCDSCRFPNLVARNLEDLTAACSLRQKGGSRVFITSSTDAIVGEQLSEFWNRDEEASGSEEDISDLDDGNEVVNNLARSKGQSRLGVNEKLDLLQRAEEKYYRNENTNKQRNKVDKNAISDTLRGASRQRLQNALKQAQERLGGDLKIEMEASASLLEDECYKKYGKTGKSFYYSQVASTIRWLTTTSSDNLMNRLRTVDVSSSLNVFSEVEQSLTPPPASAPCAKEETSNEVSGNAVTEIIPCDVPLENSFNTNLPPIPSFSEFVNSRKAKKDQSGDTKKHSSRVEKKMRIQ 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08640 720 CDD DEXHc_RecQ 29 229 - -
Vifa1g08640 720 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 48 222 IPR014001 -
Vifa1g08640 720 SMART ultradead3 36 238 IPR014001 -
Vifa1g08640 720 PANTHER DNA HELICASE RECQ FAMILY MEMBER 17 568 - -
Vifa1g08640 720 Pfam DEAD/DEAH box helicase 43 209 IPR011545 GO:0003676|GO:0005524
Vifa1g08640 720 FunFam RecQ family DNA helicase 230 450 - -
Vifa1g08640 720 MobiDBLite consensus disorder prediction 694 720 - -
Vifa1g08640 720 SMART helicmild6 273 349 IPR001650 -
Vifa1g08640 720 FunFam ATP-dependent DNA helicase 21 229 - -
Vifa1g08640 720 NCBIfam RecQ family ATP-dependent DNA helicase 29 438 IPR004589 GO:0004386|GO:0006310
Vifa1g08640 720 CDD SF2_C_RecQ 230 358 - -
Vifa1g08640 720 MobiDBLite consensus disorder prediction 690 720 - -
Vifa1g08640 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 370 IPR027417 -
Vifa1g08640 720 Gene3D - 230 451 IPR027417 -
Vifa1g08640 720 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 253 389 IPR001650 -
Vifa1g08640 720 Pfam RecQ zinc-binding 362 433 IPR032284 -
Vifa1g08640 720 Gene3D - 3 229 IPR027417 -
Vifa1g08640 720 MobiDBLite consensus disorder prediction 639 659 - -
Vifa1g08640 720 Pfam Helicase conserved C-terminal domain 258 347 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08640 Vifa-Chr1 1363348262 1363362395 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08640 K10901 - gmx:100819601 1154.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08640 1 1363348262 1363362395 Vifa1g08640 1 1363348262 1363362395 ECH