Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08571 ATGAGAACGTCATCGTTTGAGAGATGCAGCACCAGCAAAACGGAGGTAGACTTTCTGGAAAATTCCGAAACCTCGTCACCGACGGCGGGAAAAAATGTTTACGGCGCAATGTTGCCGGTTTTTCTCAACGACCTCCGTAGCAACCACCACAAGGAGCTCGTTGAGATAACACTTGAGCTAGAGAACGACGCGGTTGTTCTTCGCAATATAGCTTCGGTATCTTCCGCACCAAACGTGTCTCCTTCTTCAACTCACATCGCCGAAGATGAAGACAGAGGCAACTTCGCGGGCGTTGGCGTCGAGTTTTCCGTTGCGAGGAGTCTCTCAATCACGTCGAGGATTAAAAAGAAATTTCCGTGGCTGAGGTCGATGTCGTTGCGAACATCGACCTCCTCGTCGGAGAGTGTAACTGCCTTAGAGGAAGATCCGATGACAGCGCGAAATGCACGGAGAAAGCGAGCGGAACTTGATCGGACGAGATCGAGTGCTCAGAGAGGTTTGAAAGGTTTGAGATTCATTAGTAAGTCTGGTGAAGCTTGTGATGAGTTATGGAGAAAAGTTGACAAGAGGTTTGTATTTCTTGCTAAGGATGGTTTGCTCGATCGAGAAAATTTTGGCGAATGCATTGGGATGGAGGATTCGAAGGAGTTTGCGGTGGGAATATTTGATGCATTAGCTCGTAAGGAAAGAAAAGCAGTGAGCAAGATAACAAAGGAAGAGCTGCACCAATTCTGGTTGCAAATTTCAAACCAGAGCTTTGATGCTCGCCTTCAAATTTTCTTTGACATGGCAGACAGTAATGAAGATGGAAGAATTACTAGGGAGGAAGTTCAAGAGCTTATAATGTTAAGTGCTTCTGCAAATAATCTATCAAAGCTAAAAGAACAAGCTGAAGGATACGCCGCATTAATAATGGAAGAATTGGATCCAGAAAACCTTGGTTATATCGAGCTGTGGCAGCTAGAAATGTTGTTACTAGAAAAAGATAGATACATGACCTACAGTAGACAACAGAGCAGTGCAAGTGTAAACTGGAGTCAAAATATGTCAAGTTTAAGGCCCAAAAACAAGATCCACAAAATCCGCAAGACACTCCAATGTCTAGCATTAGAGTATTGGAGAAGGGGTTGGATTTTGTTACTGTGGTTGATTACCATTGTTTCTCTTTTTACATGGAAAATTTACCAGTACAAAAACAGAAAAAGTTTTGAAGTTATGAGTTATTGCTTACCAGTAGCCAAAGGCGCCGCTGAGACACTCAAGTTCAACATGGCTCTCATTCTTTTACCGGTTTGTCGAAATACATTGACATGGCTTCGCTCTACAAAAGTTAGGAAATTTGTCCCTTTTGATGACAATATTAATTTCCATAAGATGATTGCATTCGTCATAGTTATTGGAATAACCGTTCATGCAGGCAACCATCTCGCATGTGATTTCCCACTTCTTGCGAATTCATCCCCGGAAAAGTTTTCAATAGTATCTTCTGATTTCAATAACAAAAAGCCTACATACAAATCACTTTTGATTAGCATTGAAGGTGTGACAGGAATCACAATGGTTACTTTGATGGTTATATCATTTACTCTCGCAACTAGCCAATTTCGAAGAAATGCAGTAAATCTTCCTTCACCTATCAATAGATTGACAGGCTTTAATGCATTCTGGTACTCGCACCATCTTCTTGGTATTGTCTACATTCTTCTGTTCATTCATGGATCTTTCTTGAATTTGACACATAAGTGGTACCAGAAAACGACATGGATGTATATCTCTGTTCCGTTGTTACTCTACATTGCGGAACGTACTCTACGAACTCGTAGATCACAACATTATGCAGTAAAAGTTTTGAAGGTTTCAGTGCTACCAGGAAATGTCTTTAGCTTAATCATGTCAAAGCCTAATGGATTCAAGTACAAAAGTGGTCAATACATATTCTTACAATGCCCAAAAATCTCTCCATTTGAGTGGCACCCGTTCTCTATTACATCAGCACCAGGAGATGATTACCTAAGTGTTCACATACGAACAGTCGGTGACTGGACACGAGAACTTAAGCTACTTTTCACCGAAGATGACCAATTGGCTCCGGTAAATGTCAACGCAACATTCGGAGAACTAATACAAATGGATCAAATAGGACAGACGAAGCTGCTCGTAGATGGCCCATACGGAGCTCCAGCACAAGATTACCAGAATTTTGATGTACTGCTGCTCATAGGATTAGGAATTGGAGCAACTCCCTTCATTAGTATTCTCAGAGATCTTCTCAGTGACACGAGAACAGTAGACGAACAAACGGATTCGAACACAGAAACAACAAAATCAGATGAGAGTTTCAATAGTTTCACCTCTTCAAATGTAACGCCGGGTAGAAATAAGAGATCACAAAGGATTACAAAAGCTTATTTTTATTGGGTTACTAGAGAACCTGGATCTTTTGAATGGTTTAAAGGAGTAATGGATGAAGTTGCACAAATGGACCACAGAGGTCTAATTGAGCTGCACAACTATCTCACAAGTGTTTACGAAGAAGGTGACGCGAGATCAACCTTAATCACTATGATCCAAGCATTAAACCATGCCAAACATGGTGTTGACATTCTATCAGGCACTCAAGTGAGGACACACTTTGCTAGGCCTAATTGGAAAGAAGTTTTCACAAAAATAGCTTCAAAACACCCGAATTCTACCGTAGGTGTGTTCTATTGTGGGATGCCAGTGCTTGCGAAGGAGCTAAAGAAACTATCACTTGAGCTCAGTCATAAGACAACCACACGCTTTGAATTTCATAAGGAGTACTTCTGA 2808 0.4138 MRTSSFERCSTSKTEVDFLENSETSSPTAGKNVYGAMLPVFLNDLRSNHHKELVEITLELENDAVVLRNIASVSSAPNVSPSSTHIAEDEDRGNFAGVGVEFSVARSLSITSRIKKKFPWLRSMSLRTSTSSSESVTALEEDPMTARNARRKRAELDRTRSSAQRGLKGLRFISKSGEACDELWRKVDKRFVFLAKDGLLDRENFGECIGMEDSKEFAVGIFDALARKERKAVSKITKEELHQFWLQISNQSFDARLQIFFDMADSNEDGRITREEVQELIMLSASANNLSKLKEQAEGYAALIMEELDPENLGYIELWQLEMLLLEKDRYMTYSRQQSSASVNWSQNMSSLRPKNKIHKIRKTLQCLALEYWRRGWILLLWLITIVSLFTWKIYQYKNRKSFEVMSYCLPVAKGAAETLKFNMALILLPVCRNTLTWLRSTKVRKFVPFDDNINFHKMIAFVIVIGITVHAGNHLACDFPLLANSSPEKFSIVSSDFNNKKPTYKSLLISIEGVTGITMVTLMVISFTLATSQFRRNAVNLPSPINRLTGFNAFWYSHHLLGIVYILLFIHGSFLNLTHKWYQKTTWMYISVPLLLYIAERTLRTRRSQHYAVKVLKVSVLPGNVFSLIMSKPNGFKYKSGQYIFLQCPKISPFEWHPFSITSAPGDDYLSVHIRTVGDWTRELKLLFTEDDQLAPVNVNATFGELIQMDQIGQTKLLVDGPYGAPAQDYQNFDVLLLIGLGIGATPFISILRDLLSDTRTVDEQTDSNTETTKSDESFNSFTSSNVTPGRNKRSQRITKAYFYWVTREPGSFEWFKGVMDEVAQMDHRGLIELHNYLTSVYEEGDARSTLITMIQALNHAKHGVDILSGTQVRTHFARPNWKEVFTKIASKHPNSTVGVFYCGMPVLAKELKKLSLELSHKTTTRFEFHKEYF 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08571 935 FunFam Respiratory burst oxidase protein E 725 935 - -
Vifa1g08571 935 Gene3D Translation factors 598 696 - -
Vifa1g08571 935 MobiDBLite consensus disorder prediction 144 158 - -
Vifa1g08571 935 FunFam Respiratory burst oxidase homolog A 600 692 - -
Vifa1g08571 935 CDD EFh 235 282 IPR002048 GO:0005509
Vifa1g08571 935 MobiDBLite consensus disorder prediction 132 158 - -
Vifa1g08571 935 Pfam FAD-binding domain 612 727 IPR013112 GO:0016491
Vifa1g08571 935 Gene3D - 156 273 - -
Vifa1g08571 935 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 733 935 IPR039261 -
Vifa1g08571 935 PANTHER NADPH OXIDASE 217 935 - -
Vifa1g08571 935 PRINTS Cytochrome B-245 heavy chain signature 552 572 IPR000778 GO:0016020|GO:0016491
Vifa1g08571 935 PRINTS Cytochrome B-245 heavy chain signature 460 478 IPR000778 GO:0016020|GO:0016491
Vifa1g08571 935 PRINTS Cytochrome B-245 heavy chain signature 739 756 IPR000778 GO:0016020|GO:0016491
Vifa1g08571 935 FunFam Respiratory burst oxidase homolog A 156 273 - -
Vifa1g08571 935 Pfam Ferric reductase like transmembrane component 415 569 IPR013130 -
Vifa1g08571 935 Gene3D - 725 935 IPR039261 -
Vifa1g08571 935 Pfam Ferric reductase NAD binding domain 734 917 IPR013121 GO:0016491
Vifa1g08571 935 SUPERFAMILY EF-hand 182 332 IPR011992 -
Vifa1g08571 935 MobiDBLite consensus disorder prediction 761 793 - -
Vifa1g08571 935 ProSitePatterns EF-hand calcium-binding domain. 265 277 IPR018247 -
Vifa1g08571 935 ProSiteProfiles EF-hand calcium-binding domain profile. 252 287 IPR002048 GO:0005509
Vifa1g08571 935 SFLD NADPH oxidase subgroup (NOX) 7 935 - -
Vifa1g08571 935 MobiDBLite consensus disorder prediction 773 793 - -
Vifa1g08571 935 Pfam Respiratory burst NADPH oxidase 156 255 IPR013623 GO:0004601|GO:0050664
Vifa1g08571 935 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 609 730 IPR017927 GO:0016491
Vifa1g08571 935 CDD NOX_Duox_like_FAD_NADP 616 887 - -
Vifa1g08571 935 SFLD Ferric reductase subgroup (FRE) 376 935 - -
Vifa1g08571 935 SUPERFAMILY Riboflavin synthase domain-like 611 727 IPR017938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08571 Vifa-Chr1 1350791298 1350796849 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08571 25 935 Miscellaneous Gene Families AT1G19230 61.563 0.0 1152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08571 K13447 - gmx:100796455 1469.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08571 1 1350791298 1350796849 Vifa1g08571 1 1350791298 1350796849 ECH