Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08144 ATGGTTAGTGTGTCTGAAATCCGCAAGGCTCAGAGGGCAGAAGGTCCTGCAACTATCTTGGCCATTGGCACCGCAAACCCAGCTAACTGTGTTGAACAAAGCACTTATCCTGATTTTTACTTTAAGATCACAAACAGTGAACACAAGACTGTACTCAAAGAGAAATTCCAACGCATGTGTGATAAATCTATGATTAAGAGGAGATACATGTATCTAACCGAAGAGATTCTGAAAGAGAATTCTAGTATTTGTGAATATATGGCACCTTCCTTGGATGTTAGGCAAGACATGGTCGTGGTAGAGGTGCCTAGACTAGGGAAGGAGGCTGCAGTGAAGGCTATCAAAGAATGGGGTCAACCAAAATCCAAGATTACTCACTTGATCTTTTGCACCACAAGTGGTGTAGACATGCCTGGAGCCGATTACCAACTCACCAAACTCTTAGGTCTACGTCCATATGTGAAAAGATTCATGATGTACCAACAAGGTTGCTTTGCAGGTGGCACGGTCCTTCGTTTGGCTAAGGACTTGGCTGAGAACAACAAAGGTGCTCGTGTGTTGGTTGTTTGTTCTGAAGTCACAGCAGTTACATTTCGTGGCCCTAGTGATACTCACTTGGACAGTCTTGTTGGACAAGCACTCTTTGGAGATGGAGCTGCTGCACTTATTGTTGGTTCTGATCCGGTTCCAGAAATTGAGAAACCTATATTTGAGATGGTTTGGACTGCACAAACAATTGCTCCAGACAGTGAAGGAGCCATCGATGGTCATCTTCGCGAAGCTGGACTAACATTTCATCTTCTTAAAGATGTTCCCGGGATAGTTTCAAAGAACATCAACAAAGCACTGGTTGAGGCATTCCAGCCATTAAACATATCTGATTACAACTCTATCTTTTGGATAGCTCATCCTGGCGGACCAGCAATTCTAGACCAAGTTGAGCAAAAGTTAGGCTTGAAACCTGAAAAGATGAGGGCCACACGAGAAATTCTAAGTGAATATGGAAACATGTCAAGTGCATGTGTATTGTTCATCTTAGATGAGATGCGTAAGAAATCAGCTCAAGATGGACTTAAGACTACTGGAGAAGGGCTTGACTGGGGTGTGCTGTTCGGGTTCGGACCTGGACTAACCATTGAAACTGTTGTTCTCCATAGTGTCGCTATCTGA 1170 0.4376 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTVLKEKFQRMCDKSMIKRRYMYLTEEILKENSSICEYMAPSLDVRQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNINKALVEAFQPLNISDYNSIFWIAHPGGPAILDQVEQKLGLKPEKMRATREILSEYGNMSSACVLFILDEMRKKSAQDGLKTTGEGLDWGVLFGFGPGLTIETVVLHSVAI 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08144 389 Pfam Chalcone and stilbene synthases, N-terminal domain 5 228 IPR001099 -
Vifa1g08144 389 Pfam Chalcone and stilbene synthases, C-terminal domain 238 387 IPR012328 -
Vifa1g08144 389 CDD CHS_like 16 384 - -
Vifa1g08144 389 PIRSF PKS_III 2 389 IPR011141 GO:0009058|GO:0016747
Vifa1g08144 389 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Vifa1g08144 389 SUPERFAMILY Thiolase-like 235 386 IPR016039 GO:0016746
Vifa1g08144 389 SUPERFAMILY Thiolase-like 1 233 IPR016039 GO:0016746
Vifa1g08144 389 Gene3D - 1 235 IPR016039 GO:0016746
Vifa1g08144 389 FunFam Chalcone synthase 2 1 235 - -
Vifa1g08144 389 FunFam Chalcone synthase 1 236 388 - -
Vifa1g08144 389 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 4 387 IPR011141 GO:0009058|GO:0016747
Vifa1g08144 389 Gene3D - 236 389 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08144 Vifa-Chr1 1271166922 1271168197 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08144 150 383 Miscellaneous Gene Families AT3G52160 26.582 2.42e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08144 K00660 - gmx:100170701 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08144 1 1271166922 1271168197 Vifa1g08144 1 1271166922 1271168197 ECH