Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07994 ATGAAGAATCAACCTCAACATAGATCAAATACCAAATGCAAATACAAATTTCAAGGAGATTATGTTAGTAAAATTTTTGGCCTCTCTTTCTCCTTCCTATTTTCCATTTGGTGCCTCGTTTCCATCTTCCATTCTAGGCTTCACCTTGTTCATGGTTCTTCTAAAGGAGGAGATATGTTAGAGTTGAATGAATCAACCAGCATTAGTCAGAAACTAGTAAAACCAATGTACTCGGTTGCGGAAACAATTAGTTTAGAACAAGTATTTTGGAGAGTTTTAGGTAATAATAGTAGATTAGTATGCAAGTTACAATCTCAACCAGAGGAAAAGAAACTTCAATCATCGCATGAATTCCAAAACATATCAGCATTAGAAAAGCAAGAAAAGAGCAATGATTCGCTTGTTAACATAACACACCGTCTAGAATCGGATGGTTCTGTGTACAATTACGCGTCCGAGTCCAAAGGTGCAAAGGTAGTTGCATATAATAAGGAAGCTAAAGGTGCTATAAATATATTAGGAAAGGATCATGATAAGTATTTGAGGAATCCTTGTTCTGTTGCTGGAAAGTTTGTTGTTATCGAACTTTCTGAAGAGACTTTAGTTGATTCTGTCAAAATTGCAAACTTTGAGCATTATTCTTCGAATTTCAAGGAATTTGATTTGGCTGGTAGTTTGAATTATCCGACCGAATCGTGGAGCGAGCTAGGGAGCTTTGTTGCTACCAATGTTAAGCAGGCACAGGTTTTTAAGCTACCTAAGCCGAATTGGGTGAGGTATTTGAAGTTGAGCTTGCTTAGTCATTATGGATCTGAATTTTATTGCACACTTAGTGTTGTAGAAATTTACGGGATCAACGCTATAGAGCGAATGCTTAAGGATCTAATAGTTACTTCTGTTGAATCCATTCCTCACAAGTTACCAACTCAAAATATCAGTGACATTATAACGCCGTCTTTGAAATCAGAAGCTGATCAAATTGACAGAAAAGGTAACGAACTTGAAATTAAGAACGATACTGTGGCCGCTGAGATATCGAGTGTTAATGATGACACGCAAAAGGTTGACGCGGAAGTGACGAAAAATCCTGTGATTGTGAACTTGGTTCCTGATCCCGTGAAGGAGCTTAGACAACAATTAAATGGTAGGATAACTGGTGACACTGTTCTTAAGATTTTGATGCAGAAAGTGAAGTCTGTGGAGGTAAACTTATCGGCATTAGAGGACTATATCAAAGAATTGAATAGGAGACAAGGGATTACAATACCAAATCTTGAGAAAGTGATGTTTAGATTATCAGAAAGCTTGGAACAAAGCAAGACAGAAATCAATGATCACCAGCAGTGGAACACAAATATGGAAAAAGGAATATCAGAAGTTAAGTCATGGAAAGATGATGTATCATCTCAACTTAATGATTTAGCTAGAGAAAATAACATGTTAAGTATCAGACTAGATGTTCAAAAGGTTGCAAGGGATCAAGAAAATCTTGAAGCCAAAGAGCTTGTGGTGTTAGCAACGAGTCTTGCTTTCGTGTGCCTTGCAGTTCTGAGGATAATTTCAGCACGCCTGTTCTCGTTTTCTACGATCGATGATGATAGTGTTAACCAGACAACCAGAGGATGGTTTACACTGCTTCTATATTGCAGTTTAACAATATTCATTATTTTGTTCTATAGCTAG 1683 0.3714 MKNQPQHRSNTKCKYKFQGDYVSKIFGLSFSFLFSIWCLVSIFHSRLHLVHGSSKGGDMLELNESTSISQKLVKPMYSVAETISLEQVFWRVLGNNSRLVCKLQSQPEEKKLQSSHEFQNISALEKQEKSNDSLVNITHRLESDGSVYNYASESKGAKVVAYNKEAKGAINILGKDHDKYLRNPCSVAGKFVVIELSEETLVDSVKIANFEHYSSNFKEFDLAGSLNYPTESWSELGSFVATNVKQAQVFKLPKPNWVRYLKLSLLSHYGSEFYCTLSVVEIYGINAIERMLKDLIVTSVESIPHKLPTQNISDIITPSLKSEADQIDRKGNELEIKNDTVAAEISSVNDDTQKVDAEVTKNPVIVNLVPDPVKELRQQLNGRITGDTVLKILMQKVKSVEVNLSALEDYIKELNRRQGITIPNLEKVMFRLSESLEQSKTEINDHQQWNTNMEKGISEVKSWKDDVSSQLNDLARENNMLSIRLDVQKVARDQENLEAKELVVLATSLAFVCLAVLRIISARLFSFSTIDDDSVNQTTRGWFTLLLYCSLTIFIILFYS 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07994 560 Gene3D - 170 295 - -
Vifa1g07994 560 ProSiteProfiles SUN domain profile. 127 287 IPR012919 -
Vifa1g07994 560 Pfam Sad1 / UNC-like C-terminal 163 284 IPR012919 -
Vifa1g07994 560 PANTHER MEMBRANE PROTEIN CH1 RELATED 110 521 IPR045120 GO:0016020
Vifa1g07994 560 Coils Coil 397 417 - -
Vifa1g07994 560 SUPERFAMILY Galactose-binding domain-like 186 281 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07994 Vifa-Chr1 1248446043 1248453150 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07994 - - gmx:102668828 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07994 1 1248446043 1248453150 Vifa1g07994 1 1248446043 1248453150 ECH