Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07973 ATGGCGTCTCAAGATTCAAAACCTCCGAATCACGCGCTTCTCAGTATCTGCAAATCTCTCGTCGCCGGTGGAGTCGCCGGCGGAGTTTCACGAACAGCTGTGGCGCCTCTAGAGAGATTGAAGATTCTACTGCAAGTTCAGAATCGACACAATGTAAAATACAACGGAACAGTTCAAGGCTTGAAATATATATGGAAGAGTGAGGGTTTTAGGGGATTGTTTAAAGGAAACGGAACAAATTGTGCTCGAATTGTTCCGAATTCAGCAGTCAAGTTCTTTAGTTATGAGCAAGCGTCTAAGGGTGTTCTAAGTCTCTATCGGTTGCAAACAGGAAATGAAGAAGCTCAACTCACTCCTCTTCTGCGACTTGGAGCTGGGGCTTGTGCGGGAATCATTGCAATGTCTGCAACTTATCCTATGGACCTGGTGCGAGGACGCCTAACTGTACAGACAGAAGCATCTCCTCATCAATACAGAGGGATTTTTAATGCTCTTTCAACAGTCTTCCGGGAAGAAGGCGCTAGAGCATTGTATAAAGGATGGTTACCTTCAGTCATAGGAGTTATACCATATGTGGGTCTAAACTTTTCTGTATATGAATCTCTGAAAGATTGGTTGATTCAAACAAAACCACTTGGATTAGCTCAAGACTCAGAGCTAAGTGTGACCACAAGGCTTGCGTGTGGGGCTGCTGCTGGAACTATCGGCCAGACAGTCGCATACCCCCTTGATGTCATTCGCAGAAGAATGCAGATGGTGGGATGGAAAGGCGCTGCTTCCGTTGTCGCTGGTGATGGGAAGGGGAATCTTGAGTATACTGGCATGGTTGATGCATTCAGTAAAACTATAAAGTATGAGGGGTTTGGAGCTTTATACAAGGGCTTAGTCCCCAATTCAGTCAAGGTGGTCCCTTCCATTGCCATTGCCTTCGTGGCATACGAGATGGTCAAGGATGTTCTTGGAGTTGAAATGAGAATATCTGATTGA 987 0.4569 MASQDSKPPNHALLSICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNRHNVKYNGTVQGLKYIWKSEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGVLSLYRLQTGNEEAQLTPLLRLGAGACAGIIAMSATYPMDLVRGRLTVQTEASPHQYRGIFNALSTVFREEGARALYKGWLPSVIGVIPYVGLNFSVYESLKDWLIQTKPLGLAQDSELSVTTRLACGAAAGTIGQTVAYPLDVIRRRMQMVGWKGAASVVAGDGKGNLEYTGMVDAFSKTIKYEGFGALYKGLVPNSVKVVPSIAIAFVAYEMVKDVLGVEMRISD 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07973 328 Gene3D Mitochondrial carrier domain 11 322 IPR023395 -
Vifa1g07973 328 Pfam Mitochondrial carrier protein 117 208 IPR018108 -
Vifa1g07973 328 Pfam Mitochondrial carrier protein 219 320 IPR018108 -
Vifa1g07973 328 Pfam Mitochondrial carrier protein 15 100 IPR018108 -
Vifa1g07973 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 14 101 IPR018108 -
Vifa1g07973 328 FunFam Mitochondrial substrate carrier 12 322 - -
Vifa1g07973 328 PANTHER SOLUTE CARRIER FAMILY 25 15 322 - -
Vifa1g07973 328 PRINTS Mitochondrial carrier protein signature 178 196 IPR002067 GO:0055085
Vifa1g07973 328 PRINTS Mitochondrial carrier protein signature 132 150 IPR002067 GO:0055085
Vifa1g07973 328 PRINTS Mitochondrial carrier protein signature 32 46 IPR002067 GO:0055085
Vifa1g07973 328 PRINTS Mitochondrial carrier protein signature 76 96 IPR002067 GO:0055085
Vifa1g07973 328 PRINTS Mitochondrial carrier protein signature 229 251 IPR002067 GO:0055085
Vifa1g07973 328 PRINTS Mitochondrial carrier protein signature 19 32 IPR002067 GO:0055085
Vifa1g07973 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 319 IPR018108 -
Vifa1g07973 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 117 205 IPR018108 -
Vifa1g07973 328 SUPERFAMILY Mitochondrial carrier 14 315 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07973 Vifa-Chr1 1243281752 1243284096 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07973 20 323 EF-hand Containing Proteins AT5G51050 39.016 1.33e-64 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07973 K14684 - gmx:100784834 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07973 1 1243281752 1243284096 Vifa1g07973 1 1243281752 1243284096 ECH