Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07971 ATGTCTTCTTCGAAAGATGCAGACCCTAGCCTGGGTTATCTCACCAGAAAAGACACAGAGGTCAAACTCCCTCGACCAACTAGGGTTAAGAACAAAACCCCCGCTCCCATTCAAATCACCGCCGAGCAGATTCTTCGCGAAGCTAGAGAGCGTCAAGAGGCCGAGATCCGTCCTCCCAAGCAAAAAATCACCGATCCCACAGAACTCGGCGAGTATCGTCTCCGTAAGCGTAAGGAATTCGAGGATTTAATCCGGCGAGTTCGATGGAATGTGAGTGTTTGGATAAAATACGCACAGTGGGAAGAGTCGCAGAAAGACTTCAAACGTGCACGTTCTGTTTGGGAGAGAGCTTTGGAAGTTGATTACAAGAATCATACTTTATGGTTGAAATATGCAGAGGTTGAGATGAAGAATAAGTTTATTAATCATGCCAGGAATGTTTGGGATCGCGCTGTTACTCTTTTGCCTCGAGTCGATCAGTTGTGGTATAAGTATATTCATATGGAGGAGGTGCTTGGGAATGTTGCTGGAGCCAGGCAGGTTTTCGAGAGGTGGATGAAATGGATGCCGGATCAGCAAGGATGGCTGTCATATATCAAATTTGAATTAAGATATAATGAAATTGAACGAGCCAGAGGGATTTTCGAGCGATTTGTTTTGTGTCACCCTAGGGTTGGTGCTTGGATACGCTATGCCAAGTTTGAGATGAAGAATGGCGAGGTTCCTAGGGCGAGGAATGTTTATGAAAGAGCTGTCGAGAAGCTTGCTGATGATGACGAAGCCGAGCAACTTTTTGTGGCATTTGCTGAGTTTGAGGAAAGGTGTAAGGAGGCGGAGCGTGCAAGGTGTATTTATAAGTTTGCACTTGATCATATTCCGAAGGCAAGGGCGGAAGATTTGTATAGGAAATTTGTGGCATTTGAAAAGCAGTATGGTGATAGGGAAGGGATTGAGGATGCTATTGTTGGGAAGAGGAGGTTTCAATATGAAGATGAAGTGAGGAAGAATCCTTTGAATTATGATTCTTGGTTTGACTACATAAGATTGGAAGAGAGTGTGGGGAATAAGGGAAGAACTAGGGAGGTTTATGAGAGAGCTATAGCTAATGTTCCCCCAGCTGAGGAGAAACGATACTGGCAGCGTTATATTTATTTGTGGATTAATTATGCACTCTATGAAGAGCTTGATGCTGGAGATATGGAGCGAACAAGAGATGTGTACAGGGAGTGTCTCAACCAGATACCTCACCAGAAGTTCTCATTTGCTAAGGTATGGCTTCTAGCAGCCCAGTTTGAAATACGTCAGCTGAATCTCAAGGGGGCTCGTCAAATATTAGGAAATGCTATTGGAAAGGCTCCTAAAGATAAGATATTTAAGAAATACATAGAGATAGAACTGCAGCTTGGTAATATAGATCGATGCAGAAAACTGTATGAAAAGTATCTAGAGTGGTCACCTGAAAATTGCTATGCATGGAGCAAGTATGCAGAATTGGAGAGATCTTTAGCTGAGACTGAGCGAGCTAGAGCAATTTTTGAACTTGCAATTGCTCAGCCAGCATTGGATATGCCTGAGTTGTTGTGGAAGGCATACATTGACTTTGAAACTGCTGAGTGTGAGTTCGAGAAAGCTAGAGTGCTTTATGAAAGGCTTCTTGATCGAACAAAGCACTTGAAGGTATGGATAAGTTATGCAGAGTTTGAAGCAACAGCTATTGATCAGAGTTTAGACTTATCAGAACTAGAACAAAAGGAGCAATGCATTAAGCGCGCCAGAAGGGTGTTTGAGGAAGCTCTAAACTACTTCAGATCATCAGCTCCAGATTTAAAAGAAGAAAGGGCGATGCTATTGGAGAAATGGCTCAACTTGGAGGCCTCATCTGGGGAGCTAGGTGATGTTAGCTTAGTCCAGTCTAAGCTACCCAAGAAGCTCAAGAAGAGAAGACAAATTTCTACTGAAGATGGCTCTTCTAGAATTGAAGAATTTATCGATTATCTGTTTCCTGAGGAAACTCAGACAACCAATCTCAAGATCTTGGAAGCTGCTTACAAATGGAAGAAGCAAAAGTTGTCTTCAGAAGATGATTGA 2088 0.4296 MSSSKDADPSLGYLTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQKITDPTELGEYRLRKRKEFEDLIRRVRWNVSVWIKYAQWEESQKDFKRARSVWERALEVDYKNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEVLGNVAGARQVFERWMKWMPDQQGWLSYIKFELRYNEIERARGIFERFVLCHPRVGAWIRYAKFEMKNGEVPRARNVYERAVEKLADDDEAEQLFVAFAEFEERCKEAERARCIYKFALDHIPKARAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPLNYDSWFDYIRLEESVGNKGRTREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYRECLNQIPHQKFSFAKVWLLAAQFEIRQLNLKGARQILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWSPENCYAWSKYAELERSLAETERARAIFELAIAQPALDMPELLWKAYIDFETAECEFEKARVLYERLLDRTKHLKVWISYAEFEATAIDQSLDLSELEQKEQCIKRARRVFEEALNYFRSSAPDLKEERAMLLEKWLNLEASSGELGDVSLVQSKLPKKLKKRRQISTEDGSSRIEEFIDYLFPEETQTTNLKILEAAYKWKKQKLSSEDD 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07971 695 Coils Coil 495 515 - -
Vifa1g07971 695 FunFam Crooked neck pre-mRNA-splicing factor 1 329 481 - -
Vifa1g07971 695 SUPERFAMILY TPR-like 266 535 IPR011990 GO:0005515
Vifa1g07971 695 PANTHER PRE-MRNA SPLICING FACTOR 24 689 IPR045075 GO:0000398
Vifa1g07971 695 SUPERFAMILY TPR-like 81 220 IPR011990 GO:0005515
Vifa1g07971 695 MobiDBLite consensus disorder prediction 1 36 - -
Vifa1g07971 695 MobiDBLite consensus disorder prediction 11 27 - -
Vifa1g07971 695 FunFam Cell cycle control protein cwf4 482 677 - -
Vifa1g07971 695 Coils Coil 261 281 - -
Vifa1g07971 695 SMART hat_new_1 320 352 IPR003107 GO:0006396
Vifa1g07971 695 SMART hat_new_1 71 103 IPR003107 GO:0006396
Vifa1g07971 695 SMART hat_new_1 105 137 IPR003107 GO:0006396
Vifa1g07971 695 SMART hat_new_1 276 310 IPR003107 GO:0006396
Vifa1g07971 695 SMART hat_new_1 139 171 IPR003107 GO:0006396
Vifa1g07971 695 SMART hat_new_1 206 237 IPR003107 GO:0006396
Vifa1g07971 695 SMART hat_new_1 469 501 IPR003107 GO:0006396
Vifa1g07971 695 SMART hat_new_1 354 388 IPR003107 GO:0006396
Vifa1g07971 695 SMART hat_new_1 173 204 IPR003107 GO:0006396
Vifa1g07971 695 SMART hat_new_1 398 434 IPR003107 GO:0006396
Vifa1g07971 695 SMART hat_new_1 503 537 IPR003107 GO:0006396
Vifa1g07971 695 SMART hat_new_1 436 467 IPR003107 GO:0006396
Vifa1g07971 695 SMART hat_new_1 239 274 IPR003107 GO:0006396
Vifa1g07971 695 SMART hat_new_1 539 570 IPR003107 GO:0006396
Vifa1g07971 695 FunFam Cell cycle control protein 121 325 - -
Vifa1g07971 695 Pfam HAT (Half-A-TPR) repeat 207 235 IPR003107 GO:0006396
Vifa1g07971 695 Gene3D Tetratricopeptide repeat domain 523 629 IPR011990 GO:0005515
Vifa1g07971 695 Gene3D Tetratricopeptide repeat domain 323 522 IPR011990 GO:0005515
Vifa1g07971 695 Gene3D Tetratricopeptide repeat domain 122 322 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07971 Vifa-Chr1 1243231149 1243235281 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07971 K12869 - gmx:100791616 1299.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07971 1 1243231149 1243235281 Vifa1g07971 1 1243231149 1243235281 ECH