Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07967 ATGGAGGAAGAATTGGTTAATGAGAGAATTCAATTAGAGGCTTCTGAGGATTCACAGCGACAGATTAAAGAGGATGATGTGTATTCACCGATAACAGATAGCCGGAAAGTTTTGAAATCGCAACAACCATTGGAGTATAATGCTATTCTACAAGGGAAAAATGTAGTTGAGGCTGTTACTGAAGCGGCTACGTCGCAGCATGCTTATGCGACGGTTGAGGAACTAACTGTAAAAAGTTACAATGGTTCGAGTTTCGATATTGGTACATCGAATAGTCAAGTGCAAATGTATAATAATCAACAGAAACATTGGCAGAATCTTTATCAGATGACGAATAATTCTGGAAATGGAAATTCATTAAGTGATATTGGGTTGATGAATAGTGGCCAGGCTACATCTAGTGCTTGGGAAGATATTGGATCCACATCTTTTCCTGAGTTGTTAGCTAGGAAATCACACAGTGATGGTCAGAGCAATGTCATTGAACACTTGGCGGCTGGTGAGAGTAAAGAGGGTGCTGGGGATGTTCATCGAGGAATGCGGACAAAAGTATTATCCAAATCTGGGTTTGCTGAGTATTTTATTAAAAATTCGTTGAAGAGTAAGGGTGTTGTACATAAAGGTCCATCTTCGGATCGGTTCTATGTTCAGTCTAAAGAGAAAAATCAGGTCAAGGCTGGCAGTGGTGCAAATCAGAATTGGATTAAGACTAGCATTGGCGCAGATCAGAATCAGATGAAGACCAGCACTGGTACAGATCAGAAACAAATGAAGACTGGTATTGCTGCTCAGTCAAACTCTAGTAAATCAGTGAAGTATGATTCCAAAACTGCCAACTTTCCCTTTCACAGTGATGCTTCTGTGCCTAAGTCTTGCATGACTGAATGTGACGGTGTAACATTGAGAGAATGGTTAAAATCTGGCCAGCGCAAAACAGGAAAAGTGGAAAGTTTTACTATATTTAGAAAAATAGTGGATTTGGTGGATGACTCTCACTCTCGGGGAATTGCATTGCATAACCTTTGTCCATCTTACATTAAATTGTTACCGTCAAATCAGGTCATGTACATTGGTTTACCTACTCAAACACAGATGTCAGACAGTGTTGTAAATCCTGAAGTTCTTAACTCAGATAATTCTTTTATTAGAAAAAGGGTGTCTGAGCAAGTAACATCTTCCTCTATTGCTATGGAGTCCAAGAAACAAAAAATTGATGAGAGGGTGAGGGTTACTGGGAGTGACTTGTGTAATGAGACTGCTAGTCATCATAATGTTCAAACTCCTACAGTTGGATCACTAGGTTATCGAACCGAATATGAGAAAGATAACCAATTTTCTCTGTATAATTTTGGGAGAATGTCTAGCATCCCTTGTGTATCTAATACAGGTGAATTTTCATCTACATCTTTATGTGAAAGATGGGAAAATAAGTGGTATGCAAGTCCTGAGGGTGGTTGCACAACATCATCAAACATCTACTGCCTCGGTGTACTCCTTTTTGAGTTACTAAGTCATTTTGACTCTGAAAAAGCACATATTGCAACAATGTCTGATCTTCATCATAGGATTCTTCCTCCAGCTTTCCTATCAGAAAATCCTAAGGAAGCTGGCTTTTGTCTTTGGCTGCTGCATCCTGAACCATCATCACGTCCAACAACAGGGGAAATCCTACAATCCGAAGTGATCAATGGATTACAGGAGTTGTGTAGTGAGGAATTGTCATCACGTATAGACAAAGAAGATGCTGAGTCAGAATTATTATTACATTTCCTCACCTCGTTGAAAGAGCAGAAGCAGAACGATGCCTCCAAATTGGTTGAACAATTGAAGTGCTTGGAATCAGATATAAAAGAGGCAGAGAGGAGGCATAGCTCAAGAAAATCCTTTGTTTCCTCTGGCCTGCAGAACGATTACTCTTGTCAGAAAGAGATTATGCCTCTGAGAAAGGAACTTTTGAGTGTAGAAATGCTGCCCACACTTTCTGAAACAGGTGCCACAGATCACCCAGAGAAAGATATACTAAGAACTCGTGAGAACTTGTGTGTGACACAAAAAGGCGAAGAAAAACATAAAAGTAAAGATGCCTTAGGAACCTTCTTTGATGGTTTGAGCAAATATGCACGTTACAACAGGCTTGAAGTGCGGGGTATGCTAAGAAATGCAGATTTTAACAATCCTGCGAATGTGATATGCTCTCTGAGCTTTGATCGGGATGAAGATTACTTTGCTTCTGCTGGGATATCTAAGAAAATAAAAATCTTTGACTTCAATACACTTTGCAATGATTCTGTCGATATCCATTATCCTGCAGTTGAGATGTCAAACAGATCAAAGCTCAGCTGTGTTTGCTGGAATAACTATATTAAGAATTATCTTGCCTCTACAGACTACGACGGTGTAGTGAAGTTATGGGATGCTAGTACAGGTCAAGAATTTTCTCAGTACAGTGAACATGAAAAGAGGGCTTGGTCTGTTGACTTCTCTCCAGTATGCCCTACAAAATTTGCCAGTGGAAGTGATGATTGTACTGTCAAGCTGTGGAGCATCAGTGAGAGAAACTGTTTAGGAACAATCCGGAATGTTGCTAATGTCTGCTGTGTTCAATTTTCTGCTCATTCCTCTCATTTGCTAGCATTTGGATCAGCGAATTACTCGACTTACTGTTACGATCTTCGTAATCTTAGAAGTCCCTGGTGTGTATTAGTTGGCCACCGTAAAGCTGTAAGCTATGTTAAATTCTTAGACTCTGAAACACTTGTTTCTGCCTCTACTGATAATTCATTAAAGATCTGGGATCTCAATAAAACCTCTTCGGTTGGTGCATCTACAAGTGCTCGCAGCCTAACCCTGTCTGGACATACTAATGAGAAGAATTTTGTGGGGTTGTCAGTTGCTGATGGATACATTGCCTGTGGTTCAGAATCAAATGAGGTTTACACCTACTATAAAACGCTTCCCATGCCAATTACTTCACACAAGTTTGGATCTATTGATCCCATTTCTGGCAAAGAGACTGATGACGACCAAGGTCAGTTTGTTTCAAGTGTGTGCTGGAGAGGGAAGTCAAACATGCTTCTTGCGGCCAATTCAAGTGGATGTATAAAAGTGTTACAGATGGTTTAA 3123 0.4009 MEEELVNERIQLEASEDSQRQIKEDDVYSPITDSRKVLKSQQPLEYNAILQGKNVVEAVTEAATSQHAYATVEELTVKSYNGSSFDIGTSNSQVQMYNNQQKHWQNLYQMTNNSGNGNSLSDIGLMNSGQATSSAWEDIGSTSFPELLARKSHSDGQSNVIEHLAAGESKEGAGDVHRGMRTKVLSKSGFAEYFIKNSLKSKGVVHKGPSSDRFYVQSKEKNQVKAGSGANQNWIKTSIGADQNQMKTSTGTDQKQMKTGIAAQSNSSKSVKYDSKTANFPFHSDASVPKSCMTECDGVTLREWLKSGQRKTGKVESFTIFRKIVDLVDDSHSRGIALHNLCPSYIKLLPSNQVMYIGLPTQTQMSDSVVNPEVLNSDNSFIRKRVSEQVTSSSIAMESKKQKIDERVRVTGSDLCNETASHHNVQTPTVGSLGYRTEYEKDNQFSLYNFGRMSSIPCVSNTGEFSSTSLCERWENKWYASPEGGCTTSSNIYCLGVLLFELLSHFDSEKAHIATMSDLHHRILPPAFLSENPKEAGFCLWLLHPEPSSRPTTGEILQSEVINGLQELCSEELSSRIDKEDAESELLLHFLTSLKEQKQNDASKLVEQLKCLESDIKEAERRHSSRKSFVSSGLQNDYSCQKEIMPLRKELLSVEMLPTLSETGATDHPEKDILRTRENLCVTQKGEEKHKSKDALGTFFDGLSKYARYNRLEVRGMLRNADFNNPANVICSLSFDRDEDYFASAGISKKIKIFDFNTLCNDSVDIHYPAVEMSNRSKLSCVCWNNYIKNYLASTDYDGVVKLWDASTGQEFSQYSEHEKRAWSVDFSPVCPTKFASGSDDCTVKLWSISERNCLGTIRNVANVCCVQFSAHSSHLLAFGSANYSTYCYDLRNLRSPWCVLVGHRKAVSYVKFLDSETLVSASTDNSLKIWDLNKTSSVGASTSARSLTLSGHTNEKNFVGLSVADGYIACGSESNEVYTYYKTLPMPITSHKFGSIDPISGKETDDDQGQFVSSVCWRGKSNMLLAANSSGCIKVLQMV 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07967 1040 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 815 850 - -
Vifa1g07967 1040 ProSiteProfiles Trp-Asp (WD) repeats profile. 901 941 IPR001680 GO:0005515
Vifa1g07967 1040 Coils Coil 595 622 - -
Vifa1g07967 1040 SMART WD40_4 808 848 IPR001680 GO:0005515
Vifa1g07967 1040 SMART WD40_4 894 932 IPR001680 GO:0005515
Vifa1g07967 1040 SMART WD40_4 716 755 IPR001680 GO:0005515
Vifa1g07967 1040 SMART WD40_4 851 890 IPR001680 GO:0005515
Vifa1g07967 1040 SMART WD40_4 943 982 IPR001680 GO:0005515
Vifa1g07967 1040 SMART WD40_4 765 805 IPR001680 GO:0005515
Vifa1g07967 1040 SMART WD40_4 990 1038 IPR001680 GO:0005515
Vifa1g07967 1040 Pfam WD domain, G-beta repeat 810 848 IPR001680 GO:0005515
Vifa1g07967 1040 Pfam WD domain, G-beta repeat 900 932 IPR001680 GO:0005515
Vifa1g07967 1040 ProSiteProfiles Trp-Asp (WD) repeats profile. 815 857 IPR001680 GO:0005515
Vifa1g07967 1040 SUPERFAMILY Protein kinase-like (PK-like) 293 569 IPR011009 -
Vifa1g07967 1040 ProSitePatterns Trp-Asp (WD) repeats signature. 792 806 IPR019775 -
Vifa1g07967 1040 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 901 934 - -
Vifa1g07967 1040 PRINTS G protein beta WD-40 repeat signature 835 849 IPR020472 -
Vifa1g07967 1040 PRINTS G protein beta WD-40 repeat signature 919 933 IPR020472 -
Vifa1g07967 1040 PRINTS G protein beta WD-40 repeat signature 792 806 IPR020472 -
Vifa1g07967 1040 Gene3D - 699 1040 IPR015943 GO:0005515
Vifa1g07967 1040 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 698 1040 - -
Vifa1g07967 1040 SUPERFAMILY WD40 repeat-like 723 1038 IPR036322 GO:0005515
Vifa1g07967 1040 MobiDBLite consensus disorder prediction 1 26 - -
Vifa1g07967 1040 Gene3D Transferase(Phosphotransferase) domain 1 296 572 - -
Vifa1g07967 1040 MobiDBLite consensus disorder prediction 7 26 - -
Vifa1g07967 1040 PANTHER PROTEIN SPA1-RELATED 2 647 1040 IPR044630 GO:0009640
Vifa1g07967 1040 MobiDBLite consensus disorder prediction 244 266 - -
Vifa1g07967 1040 ProSitePatterns Trp-Asp (WD) repeats signature. 919 933 IPR019775 -
Vifa1g07967 1040 ProSiteProfiles Trp-Asp (WD) repeats profile. 772 814 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07967 Vifa-Chr1 1242270323 1242277162 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07967 789 950 Miscellaneous Gene Families AT5G08390 24.432 2.47e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07967 K16240 - gmx:100778303 1543.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07967 1 1242270323 1242277162 Vifa1g07967 1 1242270323 1242277162 ECH