Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07962 ATGGGGTGTTGTTTGTTGATCAATGGTTTGATCTTGTTGATTGCCATGAGTAGTCAGAATGGATTATTAGCCATGATGGATGATGAATTAATCAGTATAAATTCCTCAGCTAATTATGACTATGCAGATGCTCTTGGCAAAGCCATCTTGTTTTTTGAAGGACAACGCTCAGGGAAGTTGCCTAAAGACCAAAGAGTGAAGTGGAGGGGAGATTCTGCACTCTCTGATGGCAAGCCTCAAAATGTGAATTTGGTTGGAGGATACTACGACGCTGGTGATAATGTGAAGTTTGGATGGCCGATGTCATTTACTGTAAGCTTATTGAGTTGGGCTGCTATTGAATACGAAAGTGAGATTTCTTCGGCGAAACAACTTGATTACCTTCACAGTGCTATTCGCTGGGGCGCAGATTTCATAATACAAGCTCACACTTCTCCAACCACGCTCTTTACACAGGTAGGAGATGGAAATGCAGATCATAATTGTTGGGAGCGTCCAGAAGACATGGATACACCGAGAACAGCATACAAGATTGATGCTAATTCCCCTGGAACTGAGGCTGCAGCTGAGGCTGCTGCTGCTCTTTCTGCTGCTTCAATTGTCTTTAAGAAAACAGATGCCAATTATTCATCCAAGCTATTAAGCCAGTCAAAATCTCTATTTGATTTTGCTGATAAGTATAGAGGCACTTACTCTACTTCTTGTCCATTTTACTGCTCATACTCTGGTTACCAGGATGAACTGTTATGGGCTGCTTCTTGGCTACACAAGGCCAGTGGAGAAAGCAAGTACATACAATACATCATAAACAACCAAGGTTGGAGTCAAGCAGTGTCTGAGTTCAGCTGGGACAACAAATTTGTTGGAGCTCAAACATTATTAACACAGGAGTTCTATGGCGGAAAGAAGGACTTAGCCAAAATTCAAAGTGACGGTGAATCATTTATATGCGCATTGATGCCAGGAAGTAGCTCTCAACAGATCAAAACAACACCTGGTGGGCTTCTATATATTAGAGATAGTAGTAATTTGCAATATACCACTACCTCAACTATGGTGCTATTCATTTTCTCCAAAATCTTAAACAATAATCATATTGATGGAATCCACTGTGGCTCTGCCAAATTCTCTCCCTCAGAGATTAGAGCCTTTGCAAAATCACAGGTGGACTACATACTAGGAAACAATCCTATGAAGATGTCATACATGGTGGGATATGGGAGTAAATATCCAAAGCAACCACATCACAGAGGTTCTTCCATTCCTTCGATCAAAGCTCACCCGGCTAAAGTGGGTTGCAATGATGGCCAATCAAACTATTTCTCTTCCTCTGATCCAAATCCTAATACTCATGTTGGTGCTATTGTTGGAGGACCAAATTCTAATGACCAATACAATGATGCAAGATCTGATTACTCTCATGCAGAACCTACCACATATATGAATGCTGCTTTTGTAGGTTCTGTTGCAGCTATGGTTGCTGAAACTAAAACTGAGACTCTGCAATTTTCCTAA 1515 0.4112 MGCCLLINGLILLIAMSSQNGLLAMMDDELISINSSANYDYADALGKAILFFEGQRSGKLPKDQRVKWRGDSALSDGKPQNVNLVGGYYDAGDNVKFGWPMSFTVSLLSWAAIEYESEISSAKQLDYLHSAIRWGADFIIQAHTSPTTLFTQVGDGNADHNCWERPEDMDTPRTAYKIDANSPGTEAAAEAAAALSAASIVFKKTDANYSSKLLSQSKSLFDFADKYRGTYSTSCPFYCSYSGYQDELLWAASWLHKASGESKYIQYIINNQGWSQAVSEFSWDNKFVGAQTLLTQEFYGGKKDLAKIQSDGESFICALMPGSSSQQIKTTPGGLLYIRDSSNLQYTTTSTMVLFIFSKILNNNHIDGIHCGSAKFSPSEIRAFAKSQVDYILGNNPMKMSYMVGYGSKYPKQPHHRGSSIPSIKAHPAKVGCNDGQSNYFSSSDPNPNTHVGAIVGGPNSNDQYNDARSDYSHAEPTTYMNAAFVGSVAAMVAETKTETLQFS 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07962 504 FunFam Endoglucanase 37 497 - -
Vifa1g07962 504 MobiDBLite consensus disorder prediction 444 472 - -
Vifa1g07962 504 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 465 483 IPR033126 -
Vifa1g07962 504 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 391 417 IPR018221 -
Vifa1g07962 504 Gene3D - 35 503 IPR012341 GO:0005975
Vifa1g07962 504 PANTHER ENDO-1,4-BETA-GLUCANASE 24 494 - -
Vifa1g07962 504 SUPERFAMILY Six-hairpin glycosidases 38 497 IPR008928 GO:0005975
Vifa1g07962 504 Pfam Glycosyl hydrolase family 9 41 487 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07962 Vifa-Chr1 1241521971 1241524196 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07962 22 496 Glycoside Hydrolase AT4G23560 69.895 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07962 - - cam:101489803 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07962 1 1241521971 1241524196 Vifa1g07962 1 1241521971 1241524196 ECH