Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07942 ATGAGCATTGCCATAGCAACACTACCACTCTCAGCGTCTCAGCCAAAACACCTTAAAATCAAATCCAATCTTATTTTTAAGTATTCTAAGACAAACAAAACATACTTAGTACTAATCCAATGTTGTCACAACCGAACAGAATCCAAAGATTCACTTAACAACAACAATGGACATGCCAGGTTTCCAGAGAAAAATCCTCTCATAAACCCCTTAGTAGCTTCCACCATTGGTGCTGTACCTCCAAGGCCTAGAAGAATAATCCTTGTAAGACATGGAGAAAGTGAAGGAAACGTGGATGAGAGTGTTTACACTAGGGTACCTGATCCTAAAATAGGCCTAACCAACAAAGGAAAGGTTCAAGCAGAGGAATGTGGTCAAAGAATCAAGAACATGATTGAGAAAGATGGTGATGAAAATTGGCAACTCTACTTTTATGTGTCTCCGTATAGAAGAACTCTTGAAACTTTGCAAAGCTTAGCTCGTCCTTTTGACCGCTCCAGAATTGCTGGTTTCAGAGAAGAGCCTCGCATTCGAGAACAAGATTTCGGGAATTTTCAAAATAGAGAGTTGATGAAAGTTGAAAAGGCGCAACGACATCTTTATGGTCGATTCTTTTACCGATTTCCAAATGGAGAATCTGCGGCCGATGTATATGATAGAATCACAGGGTTTAGAGAAACACTGAGAGCAGATATTAATATCGGACGATACCAGCCACCAGGGGAGAAGAATTTTGATGTGAACTTGGTGATTGTGTCGCACGGTTTAACACTTAGAGTTTTTCTCATGAGGTGGTATAAGTGGACAGTTGAACAGTTTGAAGGTCTCAATAACTTTGGCAATGGAGGTGAACTTGTCATGGAAAAGGGTTATGGTGGAAGGTATAGTTTACTGATGCATCATGATGAACAAGAGTTAAGAGAATTTGGATTGACGGATGAAATGTTGATTGATCAAGAATGGCATAAAATTGCAAGACCTGCTGAACTGAATTACGATTGTCCAATGGTGAATTCGTTCTTTCCTCATCTTCATGAAGAAACAAGCAACATCCAAAGTTTGTAA 1065 0.3953 MSIAIATLPLSASQPKHLKIKSNLIFKYSKTNKTYLVLIQCCHNRTESKDSLNNNNGHARFPEKNPLINPLVASTIGAVPPRPRRIILVRHGESEGNVDESVYTRVPDPKIGLTNKGKVQAEECGQRIKNMIEKDGDENWQLYFYVSPYRRTLETLQSLARPFDRSRIAGFREEPRIREQDFGNFQNRELMKVEKAQRHLYGRFFYRFPNGESAADVYDRITGFRETLRADINIGRYQPPGEKNFDVNLVIVSHGLTLRVFLMRWYKWTVEQFEGLNNFGNGGELVMEKGYGGRYSLLMHHDEQELREFGLTDEMLIDQEWHKIARPAELNYDCPMVNSFFPHLHEETSNIQSL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07942 354 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 88 97 IPR001345 GO:0003824
Vifa1g07942 354 SMART PGAM_5 85 261 IPR013078 -
Vifa1g07942 354 Pfam Histidine phosphatase superfamily (branch 1) 86 278 IPR013078 -
Vifa1g07942 354 PANTHER BROAD-RANGE ACID PHOSPHATASE DET1 82 348 - -
Vifa1g07942 354 SUPERFAMILY Phosphoglycerate mutase-like 83 300 IPR029033 -
Vifa1g07942 354 CDD HP_PGM_like 85 299 IPR013078 -
Vifa1g07942 354 Gene3D - 82 320 IPR029033 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07942 Vifa-Chr1 1239472056 1239473636 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07942 - - psat:127120748 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07942 1 1239472056 1239473636 Vifa1g07942 1 1239472056 1239473636 ECH