Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07940 ATGGGGTTTGCTGGTAGTAGTAGTAGTAATCATGGAGGACAAGAAGGTTTATCATCTTCATGGAGGTTTTTAACAAGGAGGAAGAAGGTTAATTCTCTTGTTGAGGACAACAACAGTAAGAATTCTCATGGAGTACAACTTGCTAAGGAGTTAACTATTCCTCATCTCATGGCAATTGGTGTTGGTGCAACAATTGGTGCTGGTGTGTATGTTCTAGTTGGAACTGTGGCAAGGGAACATGCTGGACCTGCTTTACCGCTTTCATTTTTGGTTGCTGGATTAGCAGCTGCTCTTTCAGCTCTTTGCTATGCTGAGTTGGCTTGTCGCTTCCCTTCTGCAGGAAGTGCTTATCACTATGCTTACATATGTCTTGGTGAAGGGGTTGCTTGGTTGATTGGCTGGTCCTTATTACTTGAATACGGAATTGGTGGAGCTGCTGTTGCTCGCGGCATAACCCCTAATTTGGCTGCACTTATTGGTGGTGTTGACAACTTGCCAGCATTTTTATCCTATCAACATATTCCTGGGACTGATATTGTTGTAGACCCACTTGCAGCAACTATGGTATTCATCGTTACTTGGATCCTGTGTACTGGCATCAAAGAGAGTACAATGGTACAAAGTATAGTCACATCAGTAAATATATGTGCCTTGATGTTTGTGATAGTAGTTGGCGGTTATTTAGGATTCAAATCTGGATGGGTTGGATATGAACTCTCAATAGGGTATTTTCCATTCGGGATAGATGGAATGATTGCTGGTTCTGCAACAGCTTTTTTTGCATACATAGGTTTTGATGCAGTTGCCAGCACTGCTGAAGAGGTGAAAAATCCTCAAAGAGATTTACCACTAGGAATTGCTGCTTCATTGTCTGTGTGTTGTGGATTGTATATGATGGTATCCATTGTTGTTGTTGGTTTAGTACCTTACTATGCTATCAATCCTAACACCCCTATATCCTCTGCATTTGCTGACAACGGATTGCAATGGGCAGCATACATTATAAATGTTGGGGCTATTACAGCACTATGTTCATCATTGCTCGGTGGAACGTTGCCTCAGCCGAGACTTTTGATGGCTATGGGAAGGGATGGACTGCTTCCACCATTTTTTTCTGACATAAGTAAGCACAGTTATGTTCCTGTAAAGAGTACCGTAGTTACTGGCCTTGTTGCTGCAGCCTTGGCATTTTTCATGGATGTCTCTCAACTTGCTGGGATGGTTAGTGTAGGTACTCTTCTTGCATTCACCATATCAGCAATATCTATGTTGATAGTAAGATATATCCCACCATTTGAGGTTCCATTGCCCCCTTCTCTACAAGAACCAATTGATGCAGAGTCGAATGTCTGGAGCCATTTGGAAACATTCAAAAAAGATGCAAAAAATAAATGCTTAGTTGTTCAAGAGGATATATCCGTTGATTATCCCCTTATTCCCAAAAGTCTTGCAATAGACACATTTGTACATATTGGCAATAGGAAACAAATTGTTGGTTGTGTAATAGCATTCATGTGCTTAGGTGTGTTTATACTTACATTTGCAGCTGCTTCTACATATTTTCTCAGTTCAGTTAGATTTACATTATGTGGAGTTGGTGGCACTCTTGTTTTGTCTGGCCTTGTCTTTCTAACATGTATAGATCAAGATGATGCAACACACAAGTTTGGAAACTCTGGAGGTTTCACATGTCCATTGGTGCCACTGCTACCTATAATTTCCATTCTTATAAATTCCTATCTACTTATTAGTCTTGGGGGTGGTACTTGGGTGAGAGTTTCTGTATGGCTAGCATTAGGAGTTATTATTCATGTTTTCTATGGTAGAAACCATAGCTCTCTCAAACTTGATGATGCCAATTATACTCCTTCAAGCTCTCTTGCTTAG 1887 0.407 MGFAGSSSSNHGGQEGLSSSWRFLTRRKKVNSLVEDNNSKNSHGVQLAKELTIPHLMAIGVGATIGAGVYVLVGTVAREHAGPALPLSFLVAGLAAALSALCYAELACRFPSAGSAYHYAYICLGEGVAWLIGWSLLLEYGIGGAAVARGITPNLAALIGGVDNLPAFLSYQHIPGTDIVVDPLAATMVFIVTWILCTGIKESTMVQSIVTSVNICALMFVIVVGGYLGFKSGWVGYELSIGYFPFGIDGMIAGSATAFFAYIGFDAVASTAEEVKNPQRDLPLGIAASLSVCCGLYMMVSIVVVGLVPYYAINPNTPISSAFADNGLQWAAYIINVGAITALCSSLLGGTLPQPRLLMAMGRDGLLPPFFSDISKHSYVPVKSTVVTGLVAAALAFFMDVSQLAGMVSVGTLLAFTISAISMLIVRYIPPFEVPLPPSLQEPIDAESNVWSHLETFKKDAKNKCLVVQEDISVDYPLIPKSLAIDTFVHIGNRKQIVGCVIAFMCLGVFILTFAAASTYFLSSVRFTLCGVGGTLVLSGLVFLTCIDQDDATHKFGNSGGFTCPLVPLLPIISILINSYLLISLGGGTWVRVSVWLALGVIIHVFYGRNHSSLKLDDANYTPSSSLA 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07940 628 Pfam Amino acid permease 56 432 IPR002293 GO:0016020|GO:0022857|GO:0055085
Vifa1g07940 628 PANTHER INNER MEMBRANE TRANSPORTER YGJI-RELATED 25 613 - -
Vifa1g07940 628 Gene3D Amino acid/polyamine transporter I 47 441 - -
Vifa1g07940 628 PIRSF AA_transporter 483 624 - -
Vifa1g07940 628 PIRSF AA_transporter 26 434 - -
Vifa1g07940 628 Pfam C-terminus of AA_permease 562 612 IPR029485 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07940 Vifa-Chr1 1239402797 1239406137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07940 22 614 Organic Solute Cotransporters AT5G36940 63.131 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07940 K13863 - gmx:100820395 838.95