Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07925 ATGAACGTTGATCACGATCAACCACCTCACACCACCGCCACCGCCGCCGCCAAAGCACATCAAGCCTTACACACCCTAACAGCCGGCCCACTCTCCTCATCAGTCGCGAAACTCGCTGCTTCCTCCCGGTGTATCCCTTCCGAGAGAGACTTCTTCTACTACCGCAACTTCAACGAATTCAAGGTCCCTATCGATGAAATCGCGCGTGAATCACAGTCGATGTTGGAAGCAATCGGAGCCGCAGCTAATGCAGCGTTTCCGTCTGACGACATAGACGATGGATATGACTGGCTTGTGAACGTGAATGACGATGTTTTGGAGAGGTATGATGTGTCGGCTGACGAGTTTCGGAAGATTCGGGAGGAGGAGGAGAAGACTGGGCGTGTGAATGAGGCTATGATGGTGGAGGATGGATTTGAGTTGGTTTGTGGGAAAAAGAAGAAAGGTGGGAGAGGGAAGGTTGTGGCGGAGGATTCGAAAATTCCGCTGGTGGATCTTGTTAAGATCGCAATGAAGGATAAGAGGACGATGGGGCCTAAGGCGAAGAGGAGTGACGATGGACACAAGTTCATTCATCCATTGGAAAAGCTATCTGTTTTGGATTTTGTTGATAAAGATCCTGGGAATATTGTGCCACAAAAACCTGCCTCATTAGAAAGCACCCCTTTCAAGCTTGTAGAAGAAGTCAAAGATTTGAAGGAGATGGCTGCTAAGCTACGTTCTGTTAATGAATTTGCGGTTGATTTGGAACATAATCAATATCGGTCTTTCCAAGGTTTGACTTGCCTCATGCAAATCTCAACAAGGTCTGAAGATTTCGTTGTTGATACTTTGAAACTTCGCATTCATATTGGGCCCCATCTAAGGGAAATTTTCAAGGACTCTTCCAAGAGGAAGGTTATGCATGGTGCGGATAAAGATATTTTGTGGCTTCAAAGAGACTTTGGCATTTATGTTTGTAATTTGTTTGACACTGGCCAGGCTTCAAAGGTGTTAAAATTGGAGAGAAATAGTTTGGAGTATCTTCTGCACCATTTCTGTGAGGTTTCAGCAAACAAAGAGTATCAAAATGCTGAGTGGAGATTGCGCCCTATTCCTGATGAAATGTTAAGATATGCCAGAGAAGATACACACTATCTTCTGTATATATATGATTCAATGAGGATTAACTTAACTTCCTTGCCAAAGGCACCTGAAAGTTCTGATTCTCCTCTGGTGGAGGTTTACAAGCGCAGTTATGATGTCTGCATGCAGCTATATGAAAAAGAACTTCTGACAGAAAACTCCTACCTTCATATATATGGGTTGCAAGGGGCTGGTTTCAATGCTCAACAACTTGCCATTGTTTCAGGGCTGTGTGAATGGCGGGACATTGTTGCTCGTGCAGAGGATGAGAGTACAGGTTACATATTGCCAAATAAATCTGTTCTTGAAATCGCTAAGCAGATGCCCGTCACTACAAGCAAGCTACGGCGATTGTTGAAGTCAAAACACCCATATGTTGAACACAATCTTGATACTGTTGTTACCATCATTAGGCATTCAATTCAGAATGCCGATGCTTTTGAAGCAACTGCTCAACAATTGAAAGAAGCACAAGCCTCTACTGCATCAGACACAGTAGCTGTTACAGATCGAACTGAAGATCCTGTGAAGGAATTTTTTCAGCATCAAGATACCGAGGTACAAATAAAATTGAAGCCCAGTAATCGCACATCTGAGCTCCCAAGGGAAAGCCTCACTATTTCAGAGCAGACTAGGGATGCAAATGTTGATGCAATCTCGACATTGAAGGGAGCTGGCGCAACTGTTCAGGTGCTTAAAAAGCCTGGCGGTGCTTTCGGGGCACTTCTGGGGAGCTCCGCTTCAAAGAGGAAGCTTGGTCTTGATAAAAAGGGCAAAGAAGAGATCAAGCTAGAGCAAATTAGATCTTCAGTCACACTTCCTTTCCATTCATTTTTGGGCAGCAGTGAGAACTCGAAACCTGTAGTAGAAACTCCTAGTGTAGCACCAGACCAACAAAAACATGTTTCTGATCCAGTTTCCACCTCCGCTCCAGAAGAGATTATAATGCTGCACACAGATACAGGTGCAGAGGAGGATATTGAGCAGGATAACAATTTAGAAAACTCCAACGAGCACGCGAAGAAAAATTTTAGTGCCTCAACTTCGGATGAGGATGAGCCAAAGTCTCTCTCGGAACTGTCATCAAACTTTCAAAAGTGCTTTCAGGCAAACAATCAAAATAACAAAACCAGAAAGCCTAAGAAAACTGAACAAGCTAGTGGCTTATTGCAGCTGACACCATTTGACTATGAAGCAGCAATGAACCATGTTAAGTTTGGAGAAAGAAAGAAAGACCCGACCACCCAGAACTGTGACAATCGTGTGGAAAAAGAGGGCTCTGGTGTCAAGAAGAAGCGTTCGACAATAGGAGAGGCAGAACAGAGTGAGCCCAAACAATTTCAACAAGGCAGAAGGCGTCAAGCATTTCCTGCTTCTGGGAATCGCAGTGCAACTTTCCGCTGA 2529 0.4444 MNVDHDQPPHTTATAAAKAHQALHTLTAGPLSSSVAKLAASSRCIPSERDFFYYRNFNEFKVPIDEIARESQSMLEAIGAAANAAFPSDDIDDGYDWLVNVNDDVLERYDVSADEFRKIREEEEKTGRVNEAMMVEDGFELVCGKKKKGGRGKVVAEDSKIPLVDLVKIAMKDKRTMGPKAKRSDDGHKFIHPLEKLSVLDFVDKDPGNIVPQKPASLESTPFKLVEEVKDLKEMAAKLRSVNEFAVDLEHNQYRSFQGLTCLMQISTRSEDFVVDTLKLRIHIGPHLREIFKDSSKRKVMHGADKDILWLQRDFGIYVCNLFDTGQASKVLKLERNSLEYLLHHFCEVSANKEYQNAEWRLRPIPDEMLRYAREDTHYLLYIYDSMRINLTSLPKAPESSDSPLVEVYKRSYDVCMQLYEKELLTENSYLHIYGLQGAGFNAQQLAIVSGLCEWRDIVARAEDESTGYILPNKSVLEIAKQMPVTTSKLRRLLKSKHPYVEHNLDTVVTIIRHSIQNADAFEATAQQLKEAQASTASDTVAVTDRTEDPVKEFFQHQDTEVQIKLKPSNRTSELPRESLTISEQTRDANVDAISTLKGAGATVQVLKKPGGAFGALLGSSASKRKLGLDKKGKEEIKLEQIRSSVTLPFHSFLGSSENSKPVVETPSVAPDQQKHVSDPVSTSAPEEIIMLHTDTGAEEDIEQDNNLENSNEHAKKNFSASTSDEDEPKSLSELSSNFQKCFQANNQNNKTRKPKKTEQASGLLQLTPFDYEAAMNHVKFGERKKDPTTQNCDNRVEKEGSGVKKKRSTIGEAEQSEPKQFQQGRRRQAFPASGNRSATFR 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07925 842 MobiDBLite consensus disorder prediction 657 681 - -
Vifa1g07925 842 MobiDBLite consensus disorder prediction 657 686 - -
Vifa1g07925 842 Pfam 3'-5' exonuclease 226 388 IPR002562 GO:0003676|GO:0006139|GO:0008408
Vifa1g07925 842 SUPERFAMILY Ribonuclease H-like 196 396 IPR012337 -
Vifa1g07925 842 CDD Rrp6p_like_exo 219 411 - -
Vifa1g07925 842 Pfam PMC2NT (NUC016) domain 40 117 IPR012588 GO:0000176|GO:0006396
Vifa1g07925 842 Pfam HRDC domain 445 512 IPR002121 GO:0003676
Vifa1g07925 842 SUPERFAMILY HRDC-like 427 517 IPR010997 GO:0000166|GO:0044237
Vifa1g07925 842 MobiDBLite consensus disorder prediction 733 751 - -
Vifa1g07925 842 MobiDBLite consensus disorder prediction 815 842 - -
Vifa1g07925 842 MobiDBLite consensus disorder prediction 781 814 - -
Vifa1g07925 842 Gene3D - 153 430 IPR036397 GO:0003676
Vifa1g07925 842 Gene3D HRDC domain 431 523 IPR044876 -
Vifa1g07925 842 MobiDBLite consensus disorder prediction 713 765 - -
Vifa1g07925 842 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 27 841 IPR045092 GO:0000175|GO:0000467
Vifa1g07925 842 SMART hrdc7 442 521 IPR002121 GO:0003676
Vifa1g07925 842 SMART 35exoneu6 223 392 IPR002562 GO:0003676|GO:0006139|GO:0008408
Vifa1g07925 842 MobiDBLite consensus disorder prediction 781 842 - -
Vifa1g07925 842 FunFam Putative exosome component 10 429 524 - -
Vifa1g07925 842 ProSiteProfiles HRDC domain profile. 442 522 IPR002121 GO:0003676
Vifa1g07925 842 FunFam Protein RRP6-like 2 isoform A 168 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07925 Vifa-Chr1 1237263017 1237272015 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07925 K12591 - gmx:100815329 1182.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07925 1 1237263017 1237272015 Vifa1g07925 1 1237263017 1237272015 ECH