Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07913 ATGATCAACTTAAAGTTAGGGGTAGATGTGGTTGGTGCTCACAATCTCCTTCCTAAAGATGGAGAAGGTTCTTCTAATGCCTTTGTGGAACTTCATTTCGATGGCCAAAAGTTTAGAACAACGATTAAAGAAAAAGATCTTAATCCTGTTTGGAATGAGAGCTTCTACTTCAACATATCAGATCCTTCCAATCTTCATTATCTCACTCTTGAAGCTTATGTCCATTGCCATTCCAAAGCTACTAACTCAAGTTCGTTTCTTGGCAAGGTTAGTCTCACCGGGACTTCTTTTGTCCCTCTAGCTGATGCTGTTGTTTTGCATTATCCGTTGGAAAAGCGCGGGGTTTTTTCGCGTGTAAGAGGAGAGATTGGCCTTAAAATTTATATTACTGATAATCCAAGCATAAACTCCTCGATTCCGAGTCCTTCTGGTGAGTCTATGCACACGAATAATCATGCTGAAGTTCGTGGACCTATGAATGAACTGATGAATGGTTTGTCTGGTGACAAGGTTGAGTCCTCGAGGCACACATTTCATCATCTTCCTAACACAAATCATCATCGGCATCAACAACAGTCCACCGGCTATGCAGATACTCACTATGTAACAAAGTACGAAGCTGATGAAATGAAATCTGATCAACCACAGCCTATGAAGCTAGTGCATATGCATTCAGTTTCATCTTTACAACCGGTTGATTTTGCACTTAAAGAAACAAGTCCGTTTCTCGGTGGGGGAAGGGTTGTTGGTGGCCGTGTTGTTCATAAAGATAAGACCTCGAGTACCTATGATCTCGTGGAAAGGATGTATTTTCTGTATGTCAGGGTTGTTAAGGCTCGTGAGCTTCCTTCTATGGACATTACCGGGAGTCTTGATCCGTTTGTTGAGGTGAGAATCGGAAATTATAGAGGTATTACCAGACATTTTGATAAGAATCAGAGTCCTGAGTGGCATCAGGTGTTTGCGTTTTCGAAAGAAAGGATGCAAGCATCTGTATTAGAAGTTGTTATCAAGGACAAGGATCTCATCAAAGATGATTTTGTAGGCATTGTGAGATTTGACATCAATGAGGTTCCTTTGAGAGTTCCACCAGATAGTCCTTTGGCACCCGAGTGGTACCGTCTCCAGGATAAGAAAGGGGAGAAAGTTAAAGGCGAGTTGATGCTAGCAGTTTGGATTGGTACTCAAGCAGATGAGGCCTTTTCTGATTCATGGCATTCGGATGCAGCTTCCCCTGTGGACAGCACGCCTGCTACCACGACAGTGATACGTTCAAAAGTGTATCATGCTCCAAGGTTGTGGTATGTTCGTGTCAATGTTGTAGAAGCACAAGACTTGATTCCAACGGAGAAAAACCGTTTCCCAGATGCATATGTCAAAGTGCAGATAGGAAACCAAGTGCTGAAAACAAAGACAGTTCCTGCTAGAACTCTAAATCCACAGTGGAATGAAGATCTTGTGTTTGTTGCTGCTGAGCCTTTTGAAGATCATGTGATAATTTCAGTTGAAGATCGAGTTGGTCCGGGTAAAGATGAGATCATCGGGCGGGTTTTTATACCATTGAACGCGGTGGAGAGGCGCGCGGATGATAGAATCATTCATTCTAGATGGTTCAACCTTGAAAAGCCTGTTGTTGTGGATGTCGATCAGCTGAAGAAAGAAAAGTTCGCGAGTAGAATTCAGCTCCGTCTATGTCTAGATGGAGGATATCATGTTCTTGATGAATCAACTCATTACAGCAGCGATCTTCGTCCCACTGCAAAACAGTTATGGAGGCCACCGATCGGTGTTTTAGAACTTGGAGTGCTGAATGCAATAGGACTCCACCCTATGAAAACAAGGGATGGTAGAGGAACTTCTGATACATACTGTGTAGCAAAATATGGTCACAAATGGGTTAGAACAAGGACACTTGTCGATAATCTTTCGCCTAAATACAATGAGCAATATACTTGGGAGGTCTTTGATCCTGCAACAGTCCTCACAGTTGGTGTCTTTGACAATTCCCAAATCAGTGGTGAAAAGGGTCACAACAAAGACTTGAAAATCGGGAAGGTTAGAATTCGAATATCGACTCTTGAAACAGGAAGGATTTACACACACTCATATCCATTGCTAGTTCTTCACCCAACTGGTGTTAAAAAAATGGGTGAACTACACTTGGCAATAAGATTCTCATGCACTAATTTTTCAAACATGCTTTACCTATACTCAAAACCACTTCTCCCGAAGATGCACTACGTTAGGCCTTTCGCAGTAATGCAACTCGATATGCTACGTCATCAAGCAGTAAACATAGTAGCAGCACGGCTCGGTCGAGCAGAGCCACCGCTTCGTAAGGAAGTGGTGGAATACATGTCAGATGTTGACTCGCACCTATGGAGCATGCGTCGTAGCAAGGCAAATTTCTTTCGCCTTATGACAGTTTTTTCTGGCGTGTTTGCAGTTGGAAAATGGTTAGGTGACATCTGCATGTGGTTGAATCCTATTACAACAGTCCTTGTTCATGTGTTGTTTCTCATGTTGGTTTGCTTCCCGGAGTTGATTCTGCCTACACTTTTTCTCTACCTGTTCTTGATAGGTGTATGGAACTTCAGGTATCGAGCGAGGTACCCTCCACACATGAACACGAGAATCTCACAGGCTGATGCAGTCCACCCTGATGAGATGGATGAGGAGTTTGATACTTTTCCAACAAGCAAAAACCCTGATGTTGTGAGAATGCGGTATGATCGTTTGAGGAGTGTGGCCGGTAGAATACAATCAGTTGTAGGAGATTTGGCTAGCCAGGGTGAGAGGATTCATGCAATGTTGAGCTGGAGAGATCCGCGCGCTACTTCTTTGTTCATTACTTTCTGTTTGTTATCTGCTTTGGTTTTATATATTACACCTTTTCAAGTGGTGGTTGGTTTAGCAGGATTCTATTTCATGAGGCATCCGCGATTTAGAAACAGGCTTCCATCTGCACCGATCAACTTCTTCCGTCGTCTTCCAGCTAGAACTGATAGTATGTTGTAG 3018 0.4304 MINLKLGVDVVGAHNLLPKDGEGSSNAFVELHFDGQKFRTTIKEKDLNPVWNESFYFNISDPSNLHYLTLEAYVHCHSKATNSSSFLGKVSLTGTSFVPLADAVVLHYPLEKRGVFSRVRGEIGLKIYITDNPSINSSIPSPSGESMHTNNHAEVRGPMNELMNGLSGDKVESSRHTFHHLPNTNHHRHQQQSTGYADTHYVTKYEADEMKSDQPQPMKLVHMHSVSSLQPVDFALKETSPFLGGGRVVGGRVVHKDKTSSTYDLVERMYFLYVRVVKARELPSMDITGSLDPFVEVRIGNYRGITRHFDKNQSPEWHQVFAFSKERMQASVLEVVIKDKDLIKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLQDKKGEKVKGELMLAVWIGTQADEAFSDSWHSDAASPVDSTPATTTVIRSKVYHAPRLWYVRVNVVEAQDLIPTEKNRFPDAYVKVQIGNQVLKTKTVPARTLNPQWNEDLVFVAAEPFEDHVIISVEDRVGPGKDEIIGRVFIPLNAVERRADDRIIHSRWFNLEKPVVVDVDQLKKEKFASRIQLRLCLDGGYHVLDESTHYSSDLRPTAKQLWRPPIGVLELGVLNAIGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQISGEKGHNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCTNFSNMLYLYSKPLLPKMHYVRPFAVMQLDMLRHQAVNIVAARLGRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGVFAVGKWLGDICMWLNPITTVLVHVLFLMLVCFPELILPTLFLYLFLIGVWNFRYRARYPPHMNTRISQADAVHPDEMDEEFDTFPTSKNPDVVRMRYDRLRSVAGRIQSVVGDLASQGERIHAMLSWRDPRATSLFITFCLLSALVLYITPFQVVVGLAGFYFMRHPRFRNRLPSAPINFFRRLPARTDSML 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07913 1005 CDD C2C_MCTP_PRT_plant 435 585 IPR047258 -
Vifa1g07913 1005 Gene3D C2 domain 252 393 IPR035892 -
Vifa1g07913 1005 Gene3D C2 domain 581 727 IPR035892 -
Vifa1g07913 1005 Gene3D C2 domain 417 566 IPR035892 -
Vifa1g07913 1005 CDD C2B_MCTP_PRT_plant 271 395 IPR047257 -
Vifa1g07913 1005 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 270 409 IPR035892 -
Vifa1g07913 1005 ProSiteProfiles C2 domain profile. 414 538 IPR000008 -
Vifa1g07913 1005 CDD C2A_MCTP_PRT_plant 5 131 - -
Vifa1g07913 1005 FunFam C2 domain-containing protein 579 728 - -
Vifa1g07913 1005 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 596 728 IPR035892 -
Vifa1g07913 1005 SMART C2_3c 5 106 IPR000008 -
Vifa1g07913 1005 SMART C2_3c 271 367 IPR000008 -
Vifa1g07913 1005 SMART C2_3c 435 533 IPR000008 -
Vifa1g07913 1005 SMART C2_3c 597 702 IPR000008 -
Vifa1g07913 1005 ProSiteProfiles C2 domain profile. 579 703 IPR000008 -
Vifa1g07913 1005 Gene3D C2 domain 2 130 IPR035892 -
Vifa1g07913 1005 ProSiteProfiles C2 domain profile. 1 108 IPR000008 -
Vifa1g07913 1005 CDD C2D_MCTP_PRT_plant 597 722 IPR047255 -
Vifa1g07913 1005 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 143 IPR035892 -
Vifa1g07913 1005 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 5 1005 IPR047259 -
Vifa1g07913 1005 Pfam C2 domain 272 366 IPR000008 -
Vifa1g07913 1005 Pfam C2 domain 597 705 IPR000008 -
Vifa1g07913 1005 Pfam C2 domain 434 539 IPR000008 -
Vifa1g07913 1005 Pfam C2 domain 5 93 IPR000008 -
Vifa1g07913 1005 ProSiteProfiles C2 domain profile. 253 373 IPR000008 -
Vifa1g07913 1005 FunFam C2 domain-containing protein 421 566 - -
Vifa1g07913 1005 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 434 587 IPR035892 -
Vifa1g07913 1005 Pfam Plant phosphoribosyltransferase C-terminal 850 1005 IPR013583 -
Vifa1g07913 1005 FunFam C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 2 129 - -
Vifa1g07913 1005 FunFam C2 domain-containing protein 266 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07913 Vifa-Chr1 1235543855 1235546944 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07913 163 1005 Lipid Metabolism Gene Families AT4G11610 76.601 0.0 1399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07913 - - gmx:100777951 1777.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07913 1 1235543855 1235546944 Vifa1g07913 1 1235543855 1235546944 ECH