Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07846 ATGGAGAAAGGTAGAATGGTTTTGGTGGGGCTTATGTTCTTGCAGTGTTGGGTAGCTATGGCAGAAGGTGAGTATTTGAAATACAAAGATCCGAAGCAACCATTGAATACTCGAATTAAGGATCTTGTTGATCGAATGACTTTGGAAGAGAAAATCGGTCAAATGGTTCAAATCGATCGCACAAATGCTTCTGCTGATGTGATGAACAAGTATTACATTGGGAGTGTTCTAAGTGGTGGTGGAAGTGTTCCTAAACCGAAAGCTAGTGCAAAGGATTGGGTTGATATGGTGAATGAGTTTCAAAAAGGTTCATTGTCAACTAGGCTTGGAATTCCAATGATATATGGAATTGATGCTGTTCATGGTCATAACAATGTCTATAATGCTACTATTTTTCCTCACAATGTTGGTTTAGGAGCTACAAGGGATCCTCACCTAGTGAAGAAGATCGGTGATGCAACAGCTCTTGAAGTCAGAGCAACTGGAATTCAATATGCCTTTGCTCCTTGCATTGCGGTTTGTAGAGATCCAAGATGGGGTAGATGTTACGAAAGTTATAGCGAAGATCATAAAGTTGTTCAAGCTATGACTGAGATCATTCCAGGATTGCAAGGCGACCTCCCTCCAACACAAAAGGGTGTGCCATTTGTTGCCGGAAACAAGAAAGTAGCAGCTTGTGCAAAGCACTATGTTGGTGATGGTGGAACAACAAGAGGAATCAATGAGAACAACACTGTTGTAACCAGGCATGAATTGCTTAGCATTCACATGCCAGCTTACTATAACTCAATTATCAAGGGTGTCGCAACCATCATGGTCTCTTATTCAAGCTGGAACGGAGAAAAAATGCACGCTAATCGCGACTTAATCACCGGATTTCTCAAGAACACGCTCCGTTTCAGGGGTTTTGTCATATCAGATTGGCAGGGAATTGACAGGATAACTTCACCTGCTCATGCTAACTATACATATTCGATTGAAACTGGAGTCAATGCCGGTATTGACATGATAATGGTTCCATATAACTACACAGAATTCATAGATGGCTTAACTTTACTAGTGAAAAACAATGTCATACCTATCACTAGAATTGATGATGCAGTGAAGAGAATTTTGAGAGTCAAGTTTGTGATGGGTCTATTTGAAAATCCATTGGCCGATTACAGTCTCACCGACCAGCTCGGGAGCCAGGAGCATAGAGAATTGGCTAGGGAAGCTGTGAGGAAATCATTGGTACTATTAAAGAACGGTGAAAGTGCAGATAAGCCATTGCTTCCTCTTCCGAAAAAGGCTTCGAAAATACTTGTTGCTGGAACTCATGCTGATAATCTAGGTTATCAATGTGGTGGATGGACGATTGAATGGCAAGGACTTAGCGGAAACAACATTACTAGCGGTACGACAATTCTGAGTGCGATAAAAAACACAGTTGACAAAGACACCAAGATAGTTTATCAGGAGAATCCATCTCTAGACTATGTAAAATCAAATGATTTTGAATACGCGATCGTGGTAGTTGGAGAGACACCTTATGCAGAAACAAATGGCGACAATTTAAACTTAACAATATCTGGTAACGGAGCAGACACGATATACAATGTATGCGGCAAAGTGAAATGTGTGGTTGTGTTAATCACTGGTAGACCTGTGGTTATGTTACCATATGTTGACATAATTGAAGGACTTGTTGCAGCTTGGCTTCCTGGTAGTGAAGGTCATGGTGTTACTGATGTTTTGTTTGGTGATTATGGATTTAGTGGTAAACTTCCAAGGACATGGTTTAAGACTGTTGATCAGTTACCTATGAATGTTGGTGATTCTCATTATGATCCTTTGTTTCCATTTGGATTTGGTCTTACAACTAAAGGTGTTAAGGATACTTATTAG 1887 0.4043 MEKGRMVLVGLMFLQCWVAMAEGEYLKYKDPKQPLNTRIKDLVDRMTLEEKIGQMVQIDRTNASADVMNKYYIGSVLSGGGSVPKPKASAKDWVDMVNEFQKGSLSTRLGIPMIYGIDAVHGHNNVYNATIFPHNVGLGATRDPHLVKKIGDATALEVRATGIQYAFAPCIAVCRDPRWGRCYESYSEDHKVVQAMTEIIPGLQGDLPPTQKGVPFVAGNKKVAACAKHYVGDGGTTRGINENNTVVTRHELLSIHMPAYYNSIIKGVATIMVSYSSWNGEKMHANRDLITGFLKNTLRFRGFVISDWQGIDRITSPAHANYTYSIETGVNAGIDMIMVPYNYTEFIDGLTLLVKNNVIPITRIDDAVKRILRVKFVMGLFENPLADYSLTDQLGSQEHRELAREAVRKSLVLLKNGESADKPLLPLPKKASKILVAGTHADNLGYQCGGWTIEWQGLSGNNITSGTTILSAIKNTVDKDTKIVYQENPSLDYVKSNDFEYAIVVVGETPYAETNGDNLNLTISGNGADTIYNVCGKVKCVVVLITGRPVVMLPYVDIIEGLVAAWLPGSEGHGVTDVLFGDYGFSGKLPRTWFKTVDQLPMNVGDSHYDPLFPFGFGLTTKGVKDTY 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07846 628 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 411 620 IPR036881 GO:0004553|GO:0005975
Vifa1g07846 628 FunFam Glycosyl hydrolase family protein 396 622 - -
Vifa1g07846 628 Pfam Glycosyl hydrolase family 3 C-terminal domain 411 620 IPR002772 GO:0004553|GO:0005975
Vifa1g07846 628 PANTHER PERIPLASMIC BETA-GLUCOSIDASE-RELATED 24 623 - -
Vifa1g07846 628 PRINTS Glycosyl hydrolase family 3 signature 223 239 IPR001764 GO:0004553|GO:0005975
Vifa1g07846 628 PRINTS Glycosyl hydrolase family 3 signature 132 151 IPR001764 GO:0004553|GO:0005975
Vifa1g07846 628 PRINTS Glycosyl hydrolase family 3 signature 108 124 IPR001764 GO:0004553|GO:0005975
Vifa1g07846 628 PRINTS Glycosyl hydrolase family 3 signature 293 311 IPR001764 GO:0004553|GO:0005975
Vifa1g07846 628 PRINTS Glycosyl hydrolase family 3 signature 178 194 IPR001764 GO:0004553|GO:0005975
Vifa1g07846 628 SUPERFAMILY (Trans)glycosidases 26 410 IPR017853 -
Vifa1g07846 628 Gene3D - 396 623 IPR036881 GO:0004553|GO:0005975
Vifa1g07846 628 Pfam Glycosyl hydrolase family 3 N terminal domain 47 374 IPR001764 GO:0004553|GO:0005975
Vifa1g07846 628 Gene3D - 21 395 IPR036962 GO:0004553|GO:0005975
Vifa1g07846 628 FunFam Beta-D-glucan exohydrolase isoenzyme ExoI 21 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07846 Vifa-Chr1 1224507905 1224510857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07846 11 625 Glycoside Hydrolase AT5G20950 74.634 0.0 936
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07846 K05349 - gmx:100819414 1078.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07846 1 1224507905 1224510857 Vifa1g07846 1 1224507905 1224510857 ECH