Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07843 ATGGATGAGGGAGACCTCGCTACGGAGCACAAAGTGCCATCTGGTCTCATAAAAGCAATAAAGTTTGATGTTTTATGTGGGGAAGATATAGAGAAGATCGCTTCTTTGGAGATAAATGCACCCGGGCAGGTAACTTGTTCTGATTTGGGACTTCCAAATTCGTCTTATGGGTGCACGACTTGTGGTTCAAAAGATAGAAAGTCCTGTGAAGGTCATTTTGGAGCAATCAAATTTCCTTTTACCATATTACATCCATACTTCATGGCAGAGATTGCAGAAATCTTGAAAAAAATTTGCCCTGCATGTAAATCTATTCGACGTGAATTACGGATCAAGTGTACTAAATCACTCCTTGGAATCAATAATCAGCTGAAAGGTTGCAAATATTGTTCTGGAAATGGTATGGGTCGTTATCCTGCCATGAAATTCAAAGTTTCATCCAACGATTTCTTCAAGAGAAATGCAATTATTGTTGAAGTCAACGATGCATCTTTAAACAAGAAAAGAAATTTGGGGCGAGGACTGCCGGCTGATTATTGGGATTTTATTCTTGGAGATGCTCAACCAGAAGAAAATCATGTAAATAGGAGGTTTTTATCACCCGTTCAGGTTGAGCATTTATTGAGTGGTGTTGATTCAAACTTCATTGAAAAGTATATACCAAGCATGGATTTGGTTGGACTCAGTTGCTTCCTGGTGGCACCGAATTGTCATCGTGTCACGGAAGTACCTCATCGACTTTCTGGGGGATATCCATTGAGTTTTGATAACAGGACCAGAGCTTGCAAGAAATTGGTTGATTTCAGGGGTACAGCAAATGAGTTAAGTTCTCGTGTTTTGGATTGCTTGCGGTTTTCCAAGATAAATCCTGATAGAACACCAATTAATGTTTTTACTGAGTTGCAACAAAGAAAGGTTGGAGAAAATGCTTGCAATTCTTCTGGCTTAAGATGGATGAAAGATGTAGTTCTTGGAAAACGCAATGACAGTACATTCCGAACTGTGGTTGTTGGTGATCCAGACCTCGAGATAGGTGAAATTGGTATACCCTGTCAAATTGCAGAAGGTTTGCAGGTTTCTGAGTGCGTAAATAGGCAGAATAAGCAAAATTTGCTTTATTGTTGTGAGCTGCGTTTGCTAGAGAAGGGGCATATAAATGTTCGAAGAAAGGGTAATCCAGTTGTTCTGTATAAAAAAGAAGATTTGCAGATTGGAGACGAAATTTATCGTCCTCTTGTTGATGGGGATAAAGTGTTGATAAATAGACCTCCTTCCATACATCAACATTCTATGATTGCTCTCACGGTTAGGGTTCTTCCAATACCTTCTGTAGTATCTATTAACCCAATCTGTTGCTCACCTCTGCGGGGGGATTTTGATGGCGATTGCCTTCACGGGTATATTCCACAATCTATTGCTGCTAGAGTGGAGCTTAACGAGTTGGTTGCTTTGGATAAGCAACTGATTAATGGGCAGAGTGGTGCAAATCTGCTTTCGCTTTCTCAGGATAGTTTAACTGCTGCATATTTGCTGTTGCAAGATGGGGTCCTTTTGAATGTTTACCAAATACAGCAACTTCAAATGCTTTGCAATAGAAAATTAACACCCCCTGCAATTGTAAAGGCTCCTTCAAGTAATACCTCATTTTGGAGTGGCAAGCAATTGGTCAGCATGCTCTTGCCTTCTAATTTTGACTATGCTTTTCCTTCAAATGATGTTTTTGTTAGTGATGGGGAGCTGATATCTTGTTCTGAGGCTTCTGGGTGGTTACGCGATTCAGAGAACAATGTTTTCCAAAGTCTTGTGGAACATTTTCAAGGGGAGACTCTGGACATTTTGCATGGTGCACAGAAAGCTCTTTGTGACTGGTTGTCTATGACTGGGTTTAGTGTTTCCCTATCAGATTTGTACCTTACTTCTGATACCTATGCTCGTAAAAACATGATGGAGGAAATCTCATATGGATTACGAGAAGCAGAACAGGCTTGTGATTTCAACCAGTTATTGGTGAATTATTTTTGTGATTTTCTTTCAGGAAGTCTAGCAGATAGTGAAAATGTTATGACTGTAGACGTGGATCGTCTGAATTATGAAAGACAAATATCTGCTGCTCTAAGTCAAGCGTCAGTTGATGCTTTTAGACAGGTTTTTCGAAATATTCAAAGTTTAGCTGATAAATATGCGTGCAAGGAAAATACTTTCCTTGCTATGTTCAAGGCTGGAAGTAAGGGTAATTTACTGAAATTAGTGCAACATTCCATGTGCCTTGGACTGCAACATTCCCTGGTTCGCTTGTCATACAGAATTCCCCGGGAACTTACATGTGCTGGTTGGAACAGTCATATGGGGCTTCATTCAACAGAAATGTTTTCTGAACCAGGCCAATCTTACATTGCGCATGCTGTGGTTGAAAGCTCTTTTCTTACTGGGTTGAACCCACTCGAATGTTTTGTTCATTCAGTGACGAATCGTGACAGCTCTTTCAGTGACAATGCAGACCTTCCTGGGACATTGACCCGTAGACTTATGTTCTTCATGCGTGATATGTATGATGCATATGATGGATCTGTGAGAAACTTATATGGGAATCAACTTATTCAGTTCTCACATGATGCTGAAGAGGATTCGTCTTGTGATAGCTATTTTCGAGAGGATATTATAGGTGGTGAACCAGTCGGAGCGCTTTCTGCTTGTGCGTTTTCTGAGGCTGCATACAGTGCTTTGAGTCAGCCTATTAGTCTACTTGAAGCATCACCTTTGCTGAATTTAAAAAATGTTCTGGAGTGTGGTTCAAGGAAAAGAAGTGGTGATCAGACAGTGTCTTTATTTTTGTCTGAGAAAATTGGTAAACAGAGAAATGGGTTTGAGTATGCAGCACTTGAAGTTAAGAATTATTTGGAAAGATTGATGTTTTCAAACATTGTTTCTACTGTCATGATAATATTCACTCCACAGTCACGCAATCTAGAAAAATACAGTCCTTGGGTTTGCCATTTTCATTTAGACAAGGAAAATTTAATAAGAAGAAATTTAGAAGTGCATTCTATCATAGACTCTCTTTACCAGCGGTATGACTACTTCAGAAAAGATTCAAAATTCACTCTTCCCAATATGAAAATATCGAGCAAGAAATGTTGTATAGATTGCATGGCAAAGGAAAGTAGAGAAACCTCTGTTTATAAGGAAAAAGACAGTGAAGATTGCATCACCGTCACACTTGTCGAAGACTCTAAGAACTCTGAACAACTGGATGCTGTTCGGAATGTTTTGATACCTTTACTTCTGCAAACAGCTATAAAAGGATTTTTGGAGATCAAGAAGGTTGACATTCTCTGGAAGGATCTTCCAAAAGTATCGAAATCTTATGGTTCTTCTGGTGAACTATACTTGAGGGTTACCATGTCCACTGACAATGACAGCGGTGCATTCTGGGGTTCACTGATAAACCATTGTCACAGAATAATGCCGTTGATTGACTGGACACGAAGTCATCCTGATAACATTCATCATTTCTGCTCAGCCTTTGGAATCGATGCAGGGTGGCAGCAATATCTCCATAATTTGTCGTCTGCAACATCTGACACTGGCAAGTCAATCCTTCCCAAGCATCTGCGTCTTGTTGCCAATAGTCTTTCAGCTTGTGGAGAGTTTGTGGGATTAAATGCTAAAGGCATGGCGCGCCAAAGAAAACATGCAGCTGTTTCATCACCCTTCGTGCAAGCATGCTTTTCTAATCCCGGCACTTCCTTTTTAAAAGCTGCAAAGTCTGGAGTCGTAGATGATCTCCAGGGCAGCCTAGATGCATTGGCTTGGGGTAATTGTCTCCCCATGGGGACAGGTGGTCAGTTTGATATTATATACTCAGAGAAGTTACAAGAAATTGAGAAGCCTGTAGATGTGTATGGCCTGCTAGAAACCAGTTTTGACCAGCTTGAACAAGACACTGATATCCCTCAATCTCACAAATATTCATCCAGAAATTGCAATTCAGAGTTTAGGTATAAAAATGGTGGTTACACTCCCAAAGAGTCTAAGCAGTGGAAAAGTGCTATAAGAAATAACATTACTGTAAATGATATTCGGAAGCTTACTACTGCATCAAGGTTCATTCTGAACAAGTATCCAGTTGATGAGATACTAGGTGAGAGGGACAAGTCAACAATAATGAGGGTTTTGCATTTTCATCCTCATAAAAATGAGAAGCTTGGCTCTGGACTACAAGACATAAAGGTTGGATGGCATCCCAAGTTTACAGATAGCCGATGCTTTTTTATAATACGAACGGATGGGACTGTTGAAGATTTTTCATACCGCAAATGCATTATTGCTGCTCTTGATATTGTTGATCCGGAAAAGTCAAAGATCCAAAAGAAGAAATGGTCAGGAAATAATGACATAGGAACAAAAAATTGGTTGGGAAATGATGACATGGGAGCTAAAAAAGGATCTAAAAACTATGACCATGGAGTAAGAAAATGGTCTGAAAGTTATGACCTAAACACTAATAAATGGTGGAGAAGTGATGACTTGAGAAGTTATGACATGGGAAATTATGACTTGAAGGCTAACAAGTGA 4575 0.3978 MDEGDLATEHKVPSGLIKAIKFDVLCGEDIEKIASLEINAPGQVTCSDLGLPNSSYGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILKKICPACKSIRRELRIKCTKSLLGINNQLKGCKYCSGNGMGRYPAMKFKVSSNDFFKRNAIIVEVNDASLNKKRNLGRGLPADYWDFILGDAQPEENHVNRRFLSPVQVEHLLSGVDSNFIEKYIPSMDLVGLSCFLVAPNCHRVTEVPHRLSGGYPLSFDNRTRACKKLVDFRGTANELSSRVLDCLRFSKINPDRTPINVFTELQQRKVGENACNSSGLRWMKDVVLGKRNDSTFRTVVVGDPDLEIGEIGIPCQIAEGLQVSECVNRQNKQNLLYCCELRLLEKGHINVRRKGNPVVLYKKEDLQIGDEIYRPLVDGDKVLINRPPSIHQHSMIALTVRVLPIPSVVSINPICCSPLRGDFDGDCLHGYIPQSIAARVELNELVALDKQLINGQSGANLLSLSQDSLTAAYLLLQDGVLLNVYQIQQLQMLCNRKLTPPAIVKAPSSNTSFWSGKQLVSMLLPSNFDYAFPSNDVFVSDGELISCSEASGWLRDSENNVFQSLVEHFQGETLDILHGAQKALCDWLSMTGFSVSLSDLYLTSDTYARKNMMEEISYGLREAEQACDFNQLLVNYFCDFLSGSLADSENVMTVDVDRLNYERQISAALSQASVDAFRQVFRNIQSLADKYACKENTFLAMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRIPRELTCAGWNSHMGLHSTEMFSEPGQSYIAHAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDMYDAYDGSVRNLYGNQLIQFSHDAEEDSSCDSYFREDIIGGEPVGALSACAFSEAAYSALSQPISLLEASPLLNLKNVLECGSRKRSGDQTVSLFLSEKIGKQRNGFEYAALEVKNYLERLMFSNIVSTVMIIFTPQSRNLEKYSPWVCHFHLDKENLIRRNLEVHSIIDSLYQRYDYFRKDSKFTLPNMKISSKKCCIDCMAKESRETSVYKEKDSEDCITVTLVEDSKNSEQLDAVRNVLIPLLLQTAIKGFLEIKKVDILWKDLPKVSKSYGSSGELYLRVTMSTDNDSGAFWGSLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQQYLHNLSSATSDTGKSILPKHLRLVANSLSACGEFVGLNAKGMARQRKHAAVSSPFVQACFSNPGTSFLKAAKSGVVDDLQGSLDALAWGNCLPMGTGGQFDIIYSEKLQEIEKPVDVYGLLETSFDQLEQDTDIPQSHKYSSRNCNSEFRYKNGGYTPKESKQWKSAIRNNITVNDIRKLTTASRFILNKYPVDEILGERDKSTIMRVLHFHPHKNEKLGSGLQDIKVGWHPKFTDSRCFFIIRTDGTVEDFSYRKCIIAALDIVDPEKSKIQKKKWSGNNDIGTKNWLGNDDMGAKKGSKNYDHGVRKWSESYDLNTNKWWRSDDLRSYDMGNYDLKANK 1524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07843 1524 FunFam DNA-directed RNA polymerase subunit 492 630 - -
Vifa1g07843 1524 Gene3D RNA polymerase Rpb1, domain 3 492 638 IPR042102 -
Vifa1g07843 1524 Gene3D RNA polymerase II, clamp domain 7 125 IPR044893 -
Vifa1g07843 1524 Pfam RNA polymerase Rpb1, domain 4 705 761 IPR007083 GO:0003677|GO:0003899|GO:0006351
Vifa1g07843 1524 Gene3D - 640 811 IPR038120 -
Vifa1g07843 1524 Gene3D - 321 491 - -
Vifa1g07843 1524 Pfam Protein of unknown function (DUF3223) 1370 1441 - -
Vifa1g07843 1524 Gene3D - 1349 1443 - -
Vifa1g07843 1524 SMART rpolaneu7 224 512 IPR006592 GO:0003677|GO:0003899|GO:0006351
Vifa1g07843 1524 Pfam RNA polymerase Rpb1, domain 3 488 636 IPR007066 GO:0003677|GO:0003899|GO:0006351
Vifa1g07843 1524 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 12 1287 - -
Vifa1g07843 1524 CDD RNAP_IV_RPD1_N 27 858 IPR040403 -
Vifa1g07843 1524 Gene3D RNA polymerase ii 358 410 - -
Vifa1g07843 1524 PANTHER DNA-DIRECTED RNA POLYMERASE 22 1286 IPR045867 GO:0003899|GO:0006351
Vifa1g07843 1524 Pfam RNA polymerase Rpb1, domain 2 325 482 IPR000722 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07843 Vifa-Chr1 1224443000 1224455755 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07843 K16250 - gmx:100796185 2148.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07843 1 1224443000 1224455755 Vifa1g07843 1 1224443000 1224455755 ECH