Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07840 ATGAGAGAGATAATTAGCATTCATATTGGACAAGCTGGAATTCAGGTTGGTAATTCATGTTGGGAGTTATATTGTCTTGAACATGGCATTCAACCAGATGGAACAATGCCCAGTGATGTATCAAATGACCCAAAACATGATGATGCATTCAACACATTCTTTAGTGAAATTGGAACTGGGCAATATGTTCCAAGGGCTCTATTTGTTGATCTAGAGCCAACTGTAATTGATGAAATTAGAACTGGTTCTTACAGACAACTCTTTCATCCAGAACAGTTAATTTCTGGTAAAGAAGATGCTGCTAATAATTTCGCAAGGGGGCATTATACAATTGGAAAACAAGTTGAAGAACTATGTCTAGATCGAATCCGAAAATTAGCGGATAATTGCACTGGCTTGCAAGGATTCTTGGTTTTCAATGCTGTTGGTGGTGGAACCGGTTCTGGTTTAGGATCATTACTTCTAGAGAGATTGTCGGTAGATTATGGAAAAAAGTCGAAACTCGGCTTCATCATTTATCCTTCTCCTCAGGTATCGACTGCGGTTGTGGAACCCTATAACACTGTTCTATCCAACCATTCTCACATTGAGCATAGTGATGTAGTTGTGCTTTTAGACAATGAAGCAATCTATGACATTTGCAGAAGATCTTTAGACATAGAAAGACCAACATACACCAACTTAAACCGATTAATATCGCAAAGTATCTCGTCTTTAACAACCTCGTTGAGATTCGATGGTGCAATCAACGTAGACATTTCCGAATTCCAAACTAACCTTGTACCTTATCCTCGAATCCATTTCATGCTCTCGTCTTATGCGCCCGTGATATCGTCCGCGAAGGCCTATCATGAAGCATTATCGGTTCCGGAGATCACTAGGGCTGTTTTCGAGCCATCGAGTATGATGGTTAAGTGTGATCCAAGACATGGAAAATACATGGCGTGTTGCTTGATGTATCGCGGCGATATTGTCCCGAAAGATGTTAATGTTGCAGTTTCAAATATCAAGACTAAGAGAACAGTTCAATTTGTTGATTGGTGTCCAACTGGATTCAAGTGTGGCATAAACTTCCAACCTCCGACGGTTGTCCCGGGAGGCGATCTAGCCGAGGTGAGACGCGCGGTTTGTATGATAAGCAACAATACAGCTGTGTCCGAGGTATTCAACAGGATTGATCACAAATTTGATCTCATGTATGCTAAAAGAGCATTTGTTCATTGGTATGTTAGTGAAGGAATGGAAGAAGGTGAATTTTCGGAAGCTAGGGAAGATCTTGCTGCTCTTGAAAAGGATTATGATGAAGTTGGCGAAGATGGTGTAGATGATGGAGTAGAAGATTATTGA 1347 0.4068 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDVSNDPKHDDAFNTFFSEIGTGQYVPRALFVDLEPTVIDEIRTGSYRQLFHPEQLISGKEDAANNFARGHYTIGKQVEELCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFIIYPSPQVSTAVVEPYNTVLSNHSHIEHSDVVVLLDNEAIYDICRRSLDIERPTYTNLNRLISQSISSLTTSLRFDGAINVDISEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEALSVPEITRAVFEPSSMMVKCDPRHGKYMACCLMYRGDIVPKDVNVAVSNIKTKRTVQFVDWCPTGFKCGINFQPPTVVPGGDLAEVRRAVCMISNNTAVSEVFNRIDHKFDLMYAKRAFVHWYVSEGMEEGEFSEAREDLAALEKDYDEVGEDGVDDGVEDY 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07840 448 FunFam Tubulin alpha chain 385 437 - -
Vifa1g07840 448 SMART Tubulin_4 50 247 IPR003008 GO:0005525
Vifa1g07840 448 PRINTS Alpha-tubulin signature 18 33 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vifa1g07840 448 PRINTS Alpha-tubulin signature 215 227 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vifa1g07840 448 PRINTS Alpha-tubulin signature 162 173 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vifa1g07840 448 PRINTS Alpha-tubulin signature 423 439 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vifa1g07840 448 PRINTS Alpha-tubulin signature 275 290 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vifa1g07840 448 PRINTS Alpha-tubulin signature 121 129 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vifa1g07840 448 PRINTS Alpha-tubulin signature 361 380 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vifa1g07840 448 PRINTS Alpha-tubulin signature 322 343 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vifa1g07840 448 PRINTS Alpha-tubulin signature 149 161 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vifa1g07840 448 PRINTS Alpha-tubulin signature 386 402 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vifa1g07840 448 PRINTS Alpha-tubulin signature 348 361 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vifa1g07840 448 PRINTS Alpha-tubulin signature 46 59 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vifa1g07840 448 PRINTS Alpha-tubulin signature 89 102 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vifa1g07840 448 FunFam Tubulin alpha chain 1 269 - -
Vifa1g07840 448 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 245 IPR036525 -
Vifa1g07840 448 Coils Coil 419 439 - -
Vifa1g07840 448 Gene3D Tubulin/FtsZ, GTPase domain 1 269 IPR036525 -
Vifa1g07840 448 PRINTS Tubulin signature 109 133 IPR000217 GO:0005874|GO:0007017
Vifa1g07840 448 PRINTS Tubulin signature 381 409 IPR000217 GO:0005874|GO:0007017
Vifa1g07840 448 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Vifa1g07840 448 PRINTS Tubulin signature 96 107 IPR000217 GO:0005874|GO:0007017
Vifa1g07840 448 PRINTS Tubulin signature 54 73 IPR000217 GO:0005874|GO:0007017
Vifa1g07840 448 PRINTS Tubulin signature 179 192 IPR000217 GO:0005874|GO:0007017
Vifa1g07840 448 PRINTS Tubulin signature 154 175 IPR000217 GO:0005874|GO:0007017
Vifa1g07840 448 PRINTS Tubulin signature 135 153 IPR000217 GO:0005874|GO:0007017
Vifa1g07840 448 PRINTS Tubulin signature 193 213 IPR000217 GO:0005874|GO:0007017
Vifa1g07840 448 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Vifa1g07840 448 SUPERFAMILY Tubulin C-terminal domain-like 247 438 IPR008280 -
Vifa1g07840 448 CDD alpha_tubulin 2 436 - -
Vifa1g07840 448 SMART Tubulin_C_4 249 394 IPR018316 -
Vifa1g07840 448 Gene3D Helix hairpin bin 385 437 IPR023123 -
Vifa1g07840 448 Pfam Tubulin/FtsZ family, GTPase domain 3 214 IPR003008 GO:0005525
Vifa1g07840 448 Gene3D - 270 384 IPR037103 -
Vifa1g07840 448 PANTHER TUBULIN 2 439 IPR000217 GO:0005874|GO:0007017
Vifa1g07840 448 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 143 149 IPR017975 GO:0005525|GO:0005874|GO:0007017
Vifa1g07840 448 Pfam Tubulin C-terminal domain 264 393 IPR018316 -
Vifa1g07840 448 FunFam Tubulin alpha chain 270 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07840 Vifa-Chr1 1224269608 1224271887 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07840 K07374 - gmx:100780531 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07840 1 1224269608 1224271887 Vifa1g07840 1 1224269608 1224271887 ECH
Vifa1g07840 1 1224269608 1224271887 Vifa1g07840 1 1224269608 1224271887 PCT