Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07796 ATGAATGCATTAGCAGCCACCAACAGAAACTTTAGGTTGGCTTCAAGACTTTTGGGTTTGGATTCAAAAATTGAGAAAAGTTTGTTGATTCCATTCAGAGAAATTAAGGTTGAGTGTAGCATCCCAAAAGATGATGGAACCTTGGCTACTTTTGTTGGATTTAGGATTCAACATGATAACTCTAGAGGACCTATGAAAGGAGGGATAAGATATCATCCTGAGGTTGAACAAGATGAGGTGAATGCATTAGCACAACTAATGACATGGAAAACATCAGTTGCAAATCTACCATATGGTGGTGCAAAAGGAGGCATAGGGTGTGATCCTTCTCAGTTGAGTGTCTCTGAGTTAGAAAGACTTACTAGGGTTTTTACTCAGAAAATTCATGATCTTATTGGAGTTCATATTGATGTTCCCGCACCCGACATGGGAACTGGACCACAGACAATGGCATGGATATTAGATGAGTATTCAAAATTTCATGGTCACTCTCCTGCAGTAGTTACTGGAAAACCTATAGATCTTGGTGGATCTCTAGGAAGAGATGCAGCTACAGGAAGAGGTGTCCTCTTTGCAACAGAAGCTTTGCTTAATGAATATGGAATGAATGTATCTGGTCAACGGTTTATCATACAGGGTTTTGGAAATGTAGGATCTTGGGCTGCACAATTAATAAATGAAAAGGGTGGAAAAATAGTTGCTGTGAGTGACATAACTGGAGCTATAAAGAATAGTAATGGTCTTGACATTCCAAGTCTACTTAAGTATTCCAAAGAAAACAAAGGAATTAAAGGATTTCATGGTGGTGATTCAATTGATCCCAAATCAATTTTGGTTGAAGATTGTGATGTTCTTGTTCCTGCAGCTCTTGGAGGAGTCATCAACAAGGAAAATGCAAATGAGATTAAAGCCAAATTTATTGTGGAAGCTGCCAATCACCCAACTGATCCAGAAGCTGATGAGATTTTAAAAAAGAAAGGTGTTGTTATCCTTCCTGATATATTTGCAAATTCAGGAGGAGTTACAGCTAGCTACTTTGAGTGGGTGCAGAACATACAAGGGTTCATGTGGGAAGAAGAAAAGGTGAACAATGAGTTAAAGAGATACATGACAAAAGGTTTCAAAGATGTGAAAGAGATGTGCAAAACACATAACTGTGACCTTCGTATGGGAGCATTTACCCTAGCTGTTAACCGTGTAGCAAGGGCCACTGTCCTTAGAGGTTGGGAAGCTTAA 1236 0.3916 MNALAATNRNFRLASRLLGLDSKIEKSLLIPFREIKVECSIPKDDGTLATFVGFRIQHDNSRGPMKGGIRYHPEVEQDEVNALAQLMTWKTSVANLPYGGAKGGIGCDPSQLSVSELERLTRVFTQKIHDLIGVHIDVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEYGMNVSGQRFIIQGFGNVGSWAAQLINEKGGKIVAVSDITGAIKNSNGLDIPSLLKYSKENKGIKGFHGGDSIDPKSILVEDCDVLVPAALGGVINKENANEIKAKFIVEAANHPTDPEADEILKKKGVVILPDIFANSGGVTASYFEWVQNIQGFMWEEEKVNNELKRYMTKGFKDVKEMCKTHNCDLRMGAFTLAVNRVARATVLRGWEA 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07796 411 PIRSF Glu_DH 1 411 IPR014362 GO:0016639
Vifa1g07796 411 Pfam Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 33 159 IPR006097 GO:0006520|GO:0016491
Vifa1g07796 411 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 6 178 IPR046346 -
Vifa1g07796 411 ProSitePatterns Glu / Leu / Phe / Val dehydrogenases active site. 96 109 IPR033524 -
Vifa1g07796 411 FunFam Glutamate dehydrogenase 176 410 - -
Vifa1g07796 411 PANTHER GLUTAMATE DEHYDROGENASE 2 409 - -
Vifa1g07796 411 CDD NAD_bind_1_Glu_DH 176 402 IPR033922 GO:0016639
Vifa1g07796 411 Gene3D Leucine Dehydrogenase, chain A, domain 1 33 175 - -
Vifa1g07796 411 Gene3D - 176 410 - -
Vifa1g07796 411 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 167 189 IPR006095 GO:0006520|GO:0016491
Vifa1g07796 411 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 88 102 IPR006095 GO:0006520|GO:0016491
Vifa1g07796 411 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 209 229 IPR006095 GO:0006520|GO:0016491
Vifa1g07796 411 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 336 347 IPR006095 GO:0006520|GO:0016491
Vifa1g07796 411 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 176 409 IPR036291 -
Vifa1g07796 411 FunFam Glutamate dehydrogenase 33 175 - -
Vifa1g07796 411 SMART ELFV_dehydrog_3 178 408 IPR006096 GO:0006520|GO:0016491
Vifa1g07796 411 Pfam Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 176 408 IPR006096 GO:0006520|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07796 Vifa-Chr1 1218457151 1218459758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07796 1 296 EF-hand Containing Proteins AT5G07440 76.689 2.55e-176 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07796 K00261 - gmx:100777869 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07796 1 1218457151 1218459758 Vifa1g07796 1 1218457151 1218459758 ECH