Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07789 ATGTCACCAACATGTAAAAACCTTAGCTCAAACCTTAAAATAAACATGCTATCAGAGGAGCTGAGAGTTCAAGGAAGATTAGCCTTTCCAATGGTGTTGATGAATTTAGCTTGGTTTGCCAAAACAGCTATCACAACAGCATTTTTAGGTCGACTCGGTGAGCTTAGCTTAGCCGGTGGTGCACTCGGGTTCACTTTCGCCAATGTTACTGGCTTCTCGGTCTTGAATGGTTTGTCTGGTGCCATGGAGCCTATTTGTGGACAGGCTCATGGTGCTAAAAACGTGAGACTCCTTCACAAGACTCTTGTCATGACAGTTATATTGTTGCTATTGGTAACAATTCCTGTTACTTTCATGTGGCTTCATATCGACAAAATTTTGATTCATTTTGGACAACAAAAAGAGATATCAACTGTGGCTGGAACTTTTGTTTATTATCTTATACCTGATTTGTTTGTTATGTCATTCTTGTGCCCCTTGAAAGCTTATTTGAGTTCTCAAAGCATCACTCTTCCTACCATGTTTAGTTCTGGTGTAGCACTTGCTTTTCATGTTCCTGTTAACATCTTACTCTCAAAAACCATGGGTCTAAAAGGGGTTTCCATGGCTGTTTGGATAACTGATCTTATTGTTGTGATTCTTCTGGCCATTTATGTTGTAATTCTGGAGAACCGAATGGAGACTGCGTGGAAGGAAGGAGGATGGTGGGATCAGAGTGTCATGGATTGGATTAGGCTTATCAAGCTTTGTGGATCTTGTTGTCTTAACACATGTATGGAGTGGTGGTGCTATGAGATTCTAGTTTTGCTTACTGGCCACCTCGCGAACGCTACGCAGGCGCTGGGAGTTTTAACCATCGTGTTAAACTTCGACTATTTGCTTTTCTCGGTCATGTTGTCGTTGGCCACTTGTGTTTCAACCCGTGTCTCAAACGAGCTTGGCGCGAATGAAGCTGACCGTGCTTACCGGTCTGCACGTGTGTCTCTAGGAATAGGTTTCATCGCGGGATGTACCGGAAGCTTGGTGATGGTGGCAGCAAGGGGAGTTTGGGGGAAAGTTTTCAGCCATGATAGGGGGATTATAAAAGGAGTGAAGAAGACAATGTTGTTGATGGCTCTGGTGGAATTGTTTAATTTTCCTTTGGCAGTTTGTGGAGGCATAGTTCGAGGGACAGCTCGACCTTGGTTGGGTATGTATGCTAGTCTAGGGGGGTTTTATTTCTTAGCTCTGCCCCTTGGTGTTGTTTTTGCCTTCAAACTTCGTCTTGGCCTTGTTGGACTCTTCTTTGGACTACTTACTGGTATTGTAGCTTGCTTGTCGCTTTTGTTAGTTTTTATTGCTAGGATAAAGTGGGTGGAAGAAGCTGCCAAGGCACAGATACTAACAAGTTACGGTGCCAAAGAAGTTCCATGTAATGTGGCGGAAATACAAATTAGGGAACGTGAAAATGACAAAGTGTAA 1461 0.4326 MSPTCKNLSSNLKINMLSEELRVQGRLAFPMVLMNLAWFAKTAITTAFLGRLGELSLAGGALGFTFANVTGFSVLNGLSGAMEPICGQAHGAKNVRLLHKTLVMTVILLLLVTIPVTFMWLHIDKILIHFGQQKEISTVAGTFVYYLIPDLFVMSFLCPLKAYLSSQSITLPTMFSSGVALAFHVPVNILLSKTMGLKGVSMAVWITDLIVVILLAIYVVILENRMETAWKEGGWWDQSVMDWIRLIKLCGSCCLNTCMEWWCYEILVLLTGHLANATQALGVLTIVLNFDYLLFSVMLSLATCVSTRVSNELGANEADRAYRSARVSLGIGFIAGCTGSLVMVAARGVWGKVFSHDRGIIKGVKKTMLLMALVELFNFPLAVCGGIVRGTARPWLGMYASLGGFYFLALPLGVVFAFKLRLGLVGLFFGLLTGIVACLSLLLVFIARIKWVEEAAKAQILTSYGAKEVPCNVAEIQIRERENDKV 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07789 486 PANTHER MULTIDRUG RESISTANCE PROTEIN 16 451 - -
Vifa1g07789 486 CDD MATE_eukaryotic 20 457 IPR045069 GO:0042910|GO:1990961
Vifa1g07789 486 Pfam MatE 30 189 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa1g07789 486 Pfam MatE 253 414 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa1g07789 486 NCBIfam MATE family efflux transporter 30 427 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07789 Vifa-Chr1 1216013888 1216015348 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07789 K03327 - gmx:100804083 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07789 1 1216013888 1216015348 Vifa1g07789 1 1216013888 1216015348 ECH