Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07788 ATGGCTGCTACGCACTACCATTGCACCTCAACCTTGGTATCACGTTCAAACCCTTCCTTCCGGTTGATTCACAATTTGAAGCTAGTAAACTCAAACAATTCATGGCTAGGAACCAAAATTAGGGTTCAACCGTGCATTCTCAGTGTAAGACCTCCCGTGTCCGTTATACACCGTCGCCCCGTCGCCGCCACCGTTTCCTCCAGCCTCCCCACCTCAAATTCAGAGCGTGTTTCTCCTGGCCAGGAAACTCCCAAATGGTCTTCTAAGGCTATAAAGTCGATTTCAATGGCGGCATTGGAGGCGAGGAAAGTCAAGTTTACTACTACGGGTACTGAAGCCCTTATCATGGGGGTTCTTATTGAGGGTACTAATCTGGCTAACAAGTTTTTGCGAGCGAATGGAGTTACACTTTTCAAGGTGCGAGATGAAATTGTTAATGTGCTTGGAGAAGCTGATATGTTTACAGTATGCCCTGAGCGTCCTCCAATGACTGAAGATGCTCAGAAGGCCCTTGATTGGGCTGTTGATAAAAAATTAAAATCAGTTGATGGCGGGGAAATAACCACAGCACACATAATTCTTGGCATTTGGTCTGAAGTGGATTCCCCGGGACACAAGATACTATCCAACCTTGGCTTTAATGATGAAAAAGCTAAAGAGCTAGAGTCCTCTATTTCTAAAGCTGTTGCTAATGATGAATAA 702 0.4516 MAATHYHCTSTLVSRSNPSFRLIHNLKLVNSNNSWLGTKIRVQPCILSVRPPVSVIHRRPVAATVSSSLPTSNSERVSPGQETPKWSSKAIKSISMAALEARKVKFTTTGTEALIMGVLIEGTNLANKFLRANGVTLFKVRDEIVNVLGEADMFTVCPERPPMTEDAQKALDWAVDKKLKSVDGGEITTAHIILGIWSEVDSPGHKILSNLGFNDEKAKELESSISKAVANDE 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07788 233 ProSiteProfiles Clp repeat (R) domain profile. 83 228 IPR004176 -
Vifa1g07788 233 Gene3D - 85 233 IPR036628 -
Vifa1g07788 233 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 8 231 IPR044217 -
Vifa1g07788 233 Pfam Clp amino terminal domain, pathogenicity island component 186 225 IPR004176 -
Vifa1g07788 233 Pfam Clp amino terminal domain, pathogenicity island component 109 149 IPR004176 -
Vifa1g07788 233 SUPERFAMILY Double Clp-N motif 85 220 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07788 Vifa-Chr1 1216007311 1216013458 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07788 - - tpra:123908141 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07788 1 1216007311 1216013458 Vifa1g07788 1 1216007311 1216013458 ECH