Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07784 ATGGAGTGGCCTGCTTGTACGGATGAATATGAAAAGCTCTTAATAAGGATGAGCACACCAAGGGTTCTTATTGACAATGTCGTGTGTTCCACTGCTACTCTAGTCAAGGTTATTAGTGCAAGAAGACATGGTAGTTTACTTGATGCAATTCAAATTCTCATTGATCTGAACCTTGTAATTAAGAAAGCTTATATATCCTCTGATGGCAAATGGTTCATGGATGTTTTCCATGTAGTTGATCGAAACGGAAACAAGCTAATCGATGAAAGTGTTTTAAAATATATAGAACAGGCGCTTGGGAGTGGTCATAATGTGAGGACTAGTTGCGCAAACGGTCTTACTGCGTTTGAATTATCGGGAACCGATAGAGTTGGTCTTCTATCGGAGGTTTTTGCAGTACTTGCTGATCTTCAATGTGATGTTGTTGAAGCTAAGGTTTGGACTCACAATGGCCGCATTGCTTCTTTGATCTATGTTAAAGACTGCGATTCTGGAACAACTATCGATGATTCGCAGAAGATTAAAAAGATTGAAATTCGTTTAAGAAATGTTTTGAAGGGAGACAATGACATTAGAACTGCGAAAACGTCTATCTCTATGTCTGTCATGCATAGTGAAAGAAGATTGCATCAAATGATGTTCGCCGATCGTGACTACGAGAGGACTCCTATTCTCAAGCTCATTTCCGATGACACTGTAGTGACGGTCCAGAATTGGGCGGAAAGGAGTTATTCAGTTGTGAATGTTCAGTGCAAGGATCGAATCAAACTATTATTTGATGTCGTATGCAATTTGACAGACATGGAGTATGTCGTGTTTCATGCAACCATTAACACGAGTAGTAACCAAGCTTACTTGGAGTTTTATATAAGACACAATGATGGCACACCAATTAGTTCGGAACCAGAGCGACAACGCGTAATTCAATGTTTAAAAGCTTCTGTGGAGAGAAGGGCATCTGAGGGTGTTCAACTAGAGTTATGCACAGAAGACAAGAAGGGACTTTTAGCCGAAGTGATGAGAACCTTCAGAGAAAATGGACTTAATGTTACAAGAGCTGAAATATCCACCATAGGAAAAATGGCTACAAATGTTTTCTATGTAACAGATGTGATTGGAAACCAAGCTGATCCAAAAATCATAGAGTCTGTTAGGCAGAAAATTGGGTCAAGCAATTTAGAAGTAAAGGAGTTACCATTGATATATCATGAGAAGGCAGAAAGAGAGGATCAATCAGGTGGAATTGGTGGTGCAGTGTTGTGGTCTATTGGGAGCCTTGTGAGAAAAAATCTGTATAGTTTAGGATTAATTAAATCATGTTCCTAA 1326 0.3929 MEWPACTDEYEKLLIRMSTPRVLIDNVVCSTATLVKVISARRHGSLLDAIQILIDLNLVIKKAYISSDGKWFMDVFHVVDRNGNKLIDESVLKYIEQALGSGHNVRTSCANGLTAFELSGTDRVGLLSEVFAVLADLQCDVVEAKVWTHNGRIASLIYVKDCDSGTTIDDSQKIKKIEIRLRNVLKGDNDIRTAKTSISMSVMHSERRLHQMMFADRDYERTPILKLISDDTVVTVQNWAERSYSVVNVQCKDRIKLLFDVVCNLTDMEYVVFHATINTSSNQAYLEFYIRHNDGTPISSEPERQRVIQCLKASVERRASEGVQLELCTEDKKGLLAEVMRTFRENGLNVTRAEISTIGKMATNVFYVTDVIGNQADPKIIESVRQKIGSSNLEVKELPLIYHEKAEREDQSGGIGGAVLWSIGSLVRKNLYSLGLIKSCS 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07784 441 ProSiteProfiles ACT domain profile. 115 192 IPR002912 -
Vifa1g07784 441 Pfam ACT domain 325 375 IPR002912 -
Vifa1g07784 441 Pfam ACT domain 117 165 IPR002912 -
Vifa1g07784 441 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 1 397 IPR040217 -
Vifa1g07784 441 CDD ACT_ACR_3 244 318 - -
Vifa1g07784 441 CDD ACT_ACR_2 114 187 - -
Vifa1g07784 441 Gene3D - 114 191 - -
Vifa1g07784 441 SUPERFAMILY ACT-like 320 390 IPR045865 -
Vifa1g07784 441 CDD ACT_ACR_4 322 393 - -
Vifa1g07784 441 SUPERFAMILY ACT-like 29 97 IPR045865 -
Vifa1g07784 441 ProSiteProfiles ACT domain profile. 324 403 IPR002912 -
Vifa1g07784 441 SUPERFAMILY ACT-like 112 171 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07784 Vifa-Chr1 1215660650 1215662859 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07784 - - lja:Lj2g3v2002690.1 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07784 1 1215660650 1215662859 Vifa1g07784 1 1215660650 1215662859 ECH