Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07772 ATGGGCAAAGATCTGAGCGACGACCAAATCTCTTCCATGAAAGAAGCTTTCACTCTATTCGACACCGACGGCGACGGCAAGATCGCTCCATCGGAGCTCGGAATCCTCATGCGATCTCTCGGCGGAAACCCGACCCAAGCTCAACTCAAATCCATCGTCGCAGAAGAGAATCTCACATCGCCGTTCGATTTCAATCGGTTTCTGGATCTAATGTCCAAACACATGAAACCTGAGCCGTTCGATCGTCAGTTACGCGATGCGTTCAAGGTTCTCGACAAGGATTCCACCGGATTCGTCTCCGTTAACGAGCTTCGTCATATTCTGACGAGTATCGGTGAGAAGCTTGAGCCTGCTGAGTTTGATGAATGGATCAGGGAAGTTGATGTTGGTTCTGATGGCAAGATTCGCTACGAGGATTTCATCGCTAGAATGGTTGCTAAGTGA 444 0.4932 MGKDLSDDQISSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIVAEENLTSPFDFNRFLDLMSKHMKPEPFDRQLRDAFKVLDKDSTGFVSVNELRHILTSIGEKLEPAEFDEWIREVDVGSDGKIRYEDFIARMVAK 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07772 147 ProSiteProfiles EF-hand calcium-binding domain profile. 115 147 IPR002048 GO:0005509
Vifa1g07772 147 ProSiteProfiles EF-hand calcium-binding domain profile. 79 114 IPR002048 GO:0005509
Vifa1g07772 147 Pfam EF-hand domain pair 82 144 IPR002048 GO:0005509
Vifa1g07772 147 FunFam probable calcium-binding protein CML13 3 80 - -
Vifa1g07772 147 Pfam EF-hand domain 13 41 IPR002048 GO:0005509
Vifa1g07772 147 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Vifa1g07772 147 Gene3D - 3 80 - -
Vifa1g07772 147 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
Vifa1g07772 147 SMART efh_1 83 111 IPR002048 GO:0005509
Vifa1g07772 147 SMART efh_1 119 147 IPR002048 GO:0005509
Vifa1g07772 147 SMART efh_1 12 40 IPR002048 GO:0005509
Vifa1g07772 147 FunFam Myosin light chain 1 81 145 - -
Vifa1g07772 147 SUPERFAMILY EF-hand 5 144 IPR011992 -
Vifa1g07772 147 PANTHER MYOSIN LIGHT CHAIN 1, 3 4 145 - -
Vifa1g07772 147 ProSitePatterns EF-hand calcium-binding domain. 92 104 IPR018247 -
Vifa1g07772 147 Gene3D - 81 145 - -
Vifa1g07772 147 CDD EFh 83 144 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07772 Vifa-Chr1 1213234298 1213234741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07772 1 147 EF-hand Containing Proteins AT1G12310 89.189 2.96e-95 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07772 K13448 - zju:107420771 279.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07772 1 1213234298 1213234741 Vifa1g07772 1 1213234298 1213234741 ECH