Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07597 ATGGACTCACAGCAGAATAATATATTCGACACCGCCTCGCAGCCTGACACAGGTAACGATGCTTACACTTTCCTCGAATTCAATACTCAAGGCGAGGATTTCGATTATCCAGAGTTTCGCGACCCGATTAGGTCGCCGGTAGCATGGCCTACGCCCTCCGATTCACTTGCTGATCCTTCTGAAAGAGGCGGAGCCGGGTCGGATCACGCCTCGCCGGTTTCGGCTGCTCCTGGAAGCGCGACGAAAGGTAGGTCGGGTAGCGGTAGTGGAAGCAGTAGCCAGATGGTGGATTCTCTTGCTGCTGGGATGAGCGGGTTGAATTTTGAGGATACTGGTGATGATGATAATTATGAGTTTGGTAAAGGGGATTTCACTGAACATGCTTGCCGTTATTGTGGGGTGTCTAATCCCGCTTGTGTTGTAAGGTGCAATGTACCTTCGTGTCGCAAATGGTTCTGTAATTCGAGAGGAAACACTTCTGGATCGCACATCGTTAATCACCTCGTTCGGGCAAAGCATAAGGAAGTCTGTCTGCACAAAGATAGTCCACTGGGAGAGACAATTCTTGAATGCTACAACTGTGGGTGCCGTAATGTGTTTCTCCTTGGATTTATATCTGCAAAGACAGAAAGTGTAGTTGTTCTTCTTTGTCGTGAACCTTGTTTGAGTGTCAATGCTTTGAAGGATATGAATTGGGACCTTAGTCAATGGTGTCCTTTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTCAAGATCCCATCTGAACAGGAGCAGTTAAGGGCACGCCAAATAAGTGCACAGCAAATAAATAAGGTGGAAGAATTGTGGAAGACAAACCCTGATGCTTCGTTTGAGGACCTTGAGAAGCCTGGTGTAGATGATGAGCCTCAGTCTGTGGCTTTGAAATATGAAGATGCATATCAGTATCAAAATGTATTTGCACCTCTCATTAAACTTGAAGCTGATTATGATAAGATGATGAAAGAATCACAAAGCAAGGACAATGTTACAATTCGATGGGATGTTGGTCTCAATAAGAAGCGTGTTGCTTATTTTGTATTTCCTAAGGAAGACAATGAGTTACGACTTGTACCTGGTGATGAGCTACGTTTGCGTTATTCTGGTGATGCTGCACATCCTTCTTGGCAGTCAGTGGGACATGTGATTAAGCTAACTGCACAAGAAGAGGTAGCGTTGGAACTTCGGGCTAGCCAGGGAGTTCCAGTTGATGTCAACCATGGTTTTAGTGTTGATTTTGTCTGGAAAAGTACCAGCTTTGATAGGATGCAAGGAGCTATGAAAACTTTTGCTGTTGATGAGACAAGTGTCAGCGGGTATATATATCACCACTTACTGGGTCATGAAGTTGAGGTTCAGATGGTGCGTAATGCTTTGCCTCGACGCTTTGGTGCTCCGGGGCTTCCAGAACTGAATGCATCTCAAGTGTTTGCTGTCAAGAGTGTTCTTCAGAGGCCTATTAGTTTGATTCAAGGACCACCTGGAACTGGTAAAACTGTAACATCTGCAGCACTTGTATATCACATGGCCAAACAAGGCCAGGGACAGGTTTTGGTTTGTGCACCTAGTAATGTAGCCGTGGACCAGTTGGCTGAAAAAATAAGTGCTACTGGTTTGAAGGTTGTGAGGCTTTGTGCAAAGTCGAGGGAAGCTGTGAGTTCACCTGTTGAGCATTTAACTCTTCACTATCAGGTTCGACATCTTGACACATCTGATAAGAGTGAACTTCACAAGTTACAACAGCTGAAGGATGAACAAGGAGAACTTTCTAGCAGTGATGAGAAAAAATACAAAGCACTTAAGCGGGCAACAGAGAGAGAGATTTCTCAGAGTGCCGATGTGATTTGCTGTACATGTGTTGGTGCTGGAGATCCTCGGCTTGCAAATTTTAGATTCCGTCAGGTACTTATTGACGAGTCCACTCAAGCAACAGAACCTGAATGTCTCATTCCTTTGGTTCTTGGAGCGAAGCAGGTTGTTCTTGTTGGTGATCATTGTCAGCTTGGTCCAGTTATTATGTGCAAGAAAGCAGCCCGTGCTGGGTTAGCACAGTCGCTTTTTGAACGTCTTGTTCTACTTGGTGTCAGACCAATTAGGTTGCAGGTTCAGTACCGAATGCATCCATGCCTTTCTGAATTTCCATCAAACAGTTTTTATGAAGGCACTCTACAAAATGGTGTTACTGTTAACGAGAGGCAAACCACAGGAATTGATTTTCCATGGCCTGTACCAAATCGTCCCATGTTTTTTTATGTTCAGATGGGACAAGAAGAGATAAGTGCTAGCGGAACATCTTATTTGAATAGGACAGAGGCTGCAAACGTTGAAAAGATTGTAACTACTTTTTTAAAAAGTGGTGTGGTTCCAAGTCAGATCGGTGTCATAACACCTTATGAAGGGCAAAGAGCTTATATTGTAAACTATATGTCAAGAAATGGTTCTCTTAGGCAGCAACTTTACAAGGAGATTGAGGTTGCTAGTGTTGATTCCTTTCAAGGAAGGGAGAAAGACTATATCATTCTATCATGTGTTAGAAGTAATGAACATCAGGGAATTGGGTTCCTGAATGACCCTAGGAGGCTAAATGTTGCTCTGACACGAGCTAGATATGGTATTGTTATACTGGGAAACCCTAAAGTTCTTAGCAAGCAGCCTCTATGGAATGGTTTACTGACTCACTATAAGGAACACGAATGCTTAGTTGAAGGGCCTTTAAATAACTTGAAGCAGAGTATGGTTCAGTTCCAGAAACCCAAAAAGATTTATAATGAACGTAGACTTTTTTATGGGGGTGGACCTGGAGTTGCTGCTAATGATAATTTTGGTTCTGGTGCTGGCACAAGTTCAGACCGGAGGAGCGGCCGAGGAAGGGGATCTTATATGCCCTCTGGTCCACCAAATGGAAATCACAAACCTGGACTGCATCCTGCTGGGTTTCCTGTGCAAAGGGTTCCATTGCCTCCTTACCATGGTGGTCCCCAATCTCAACCATATGCCATTCCTTCTCGTGGGGCTGTTCATGGACCTGTTGGGGCAGTTCCTCATGTTCCAGCTCCAGGGAGCCGTGGTTTTGGGGCTGGGAGAGGTAATTCCGGTGCTCCAATTGGCAATCATCTTCCACACCCACAAGGCACACAACAGCCTATTGGGAATCTGGGATCCGCATTTAATTTCCCTGCATTAGAGAACCCTAACAGCCAGCCATCTGTTGGTGGTCCATTGTCTCAACCTGGCTTTGCTAATAATATGCCGGTCCAAGGGGCGGGGCAATCATTCCGAGATCAATTTTCTGTTCCTGGAATGTCTCAGGACTTCTTGGGTGATGACTTCAAGAGCCAAGGATCTCATGTTCCTTATAATGTAACTGATTTCTCTACACAGGCTTCTCAAAGTGGATATGCTGTTGACTATGCAACTCAAGGAGCACAAGGTGGATTCCCGGGCAACTTTCTTAACCAGAATTCTCAAGCCGGATATTCACGCTTTGGTTCTGGAAATGACTTTATGTCTCAGGACTACATGGGCCATGGATCTCAGGGCCTTTTCACTCAAGTGGGGTTCAGTGATCCCTTGCAAGGTGATGCAACACAGAACCATTTCAACGTGGCTAATTCTAACCCACTTCAATCACAGATGAATTCTCTCTACTCCCAGCCATTTGCCCATTACAACACACAGCCACTGAACATGCAAGCTTCTCAACCACAGCCTCAGGGTCAGAGCTCCCAGAATCAAAAAATTCACTACAACGGTTGA 3777 0.4501 MDSQQNNIFDTASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLADPSERGGAGSDHASPVSAAPGSATKGRSGSGSGSSSQMVDSLAAGMSGLNFEDTGDDDNYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDVGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPSWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVRPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERQTTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFYGGGPGVAANDNFGSGAGTSSDRRSGRGRGSYMPSGPPNGNHKPGLHPAGFPVQRVPLPPYHGGPQSQPYAIPSRGAVHGPVGAVPHVPAPGSRGFGAGRGNSGAPIGNHLPHPQGTQQPIGNLGSAFNFPALENPNSQPSVGGPLSQPGFANNMPVQGAGQSFRDQFSVPGMSQDFLGDDFKSQGSHVPYNVTDFSTQASQSGYAVDYATQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMGHGSQGLFTQVGFSDPLQGDATQNHFNVANSNPLQSQMNSLYSQPFAHYNTQPLNMQASQPQPQGQSSQNQKIHYNG 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07597 1258 Gene3D - 333 421 - -
Vifa1g07597 1258 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 486 618 IPR014001 -
Vifa1g07597 1258 Gene3D - 563 615 - -
Vifa1g07597 1258 CDD SF1_C_Upf1 713 902 IPR047187 -
Vifa1g07597 1258 Pfam Type III restriction enzyme, res subunit 483 545 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vifa1g07597 1258 MobiDBLite consensus disorder prediction 1 96 - -
Vifa1g07597 1258 PANTHER DNA2/NAM7 HELICASE FAMILY 241 959 IPR045055 -
Vifa1g07597 1258 MobiDBLite consensus disorder prediction 1236 1258 - -
Vifa1g07597 1258 CDD DEXXQc_UPF1 477 712 - -
Vifa1g07597 1258 FunFam Regulator of nonsense transcripts 1 712 923 - -
Vifa1g07597 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 474 936 IPR027417 -
Vifa1g07597 1258 CDD 1B_UPF1-like 333 420 IPR040812 -
Vifa1g07597 1258 MobiDBLite consensus disorder prediction 1 26 - -
Vifa1g07597 1258 Pfam AAA domain 577 680 IPR041677 GO:0004386
Vifa1g07597 1258 MobiDBLite consensus disorder prediction 78 96 - -
Vifa1g07597 1258 Gene3D - 441 711 IPR027417 -
Vifa1g07597 1258 ProSiteProfiles Upf1 cysteine-histidine-rich (CH-rich) domain profile. 121 280 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Vifa1g07597 1258 Pfam RNA helicase (UPF2 interacting domain) 127 280 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Vifa1g07597 1258 FunFam regulator of nonsense transcripts 1 homolog 333 421 - -
Vifa1g07597 1258 CDD ZBD_UPF1-like 128 250 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Vifa1g07597 1258 Pfam RNA helicase UPF1, 1B domain 332 421 IPR040812 -
Vifa1g07597 1258 Gene3D - 712 923 IPR027417 -
Vifa1g07597 1258 MobiDBLite consensus disorder prediction 945 1007 - -
Vifa1g07597 1258 Pfam AAA domain 690 885 IPR041679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07597 Vifa-Chr1 1178473755 1178485323 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07597 K14326 - gmx:100795594 2410.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07597 1 1178473755 1178485323 Vifa1g07597 1 1178473755 1178485323 ECH