Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07583 ATGCAAGTTCTTCAGCACTCGTCAATCCTTCTGCAGTTGATTCGCGGTTCCAGTTTAATTCTAAGGCGCTTTTCTCTTCCAATTTCCAATAATCAAAACCATTCTCAACCTTCAAAACCTCTCTTTCCTTTTCCTCGTAAATACGATTACGACGAGTCTCAGCTCCTCCACTACCTAACAAAAGGGTTGCTTCACGAAGCACGAAGCATTCTTCACTCTTCCCCATGCGGAAACCTCCACTCCCGTGTTGTTCACTGGACTTCTTTGCTCACCTTCTACGCAAAACATGGTTACATAGAAGAAGCTCGAAACCTGTTCGACATAATGCCTCACAGAAACATTGTCACTTACAATGCAATGTTGTCTGCATATCTTCAATCCGGTATGCTCCAACAGGGTCAGATGTTTTTCTATGATATGCCGGTGAGAAATGTTGTTTCTTGGACTGCAATGCTTAGTGGGTTGGCTGATGCGGGGAGGATTGATGATGCGAGAAAGGTGTTTGATGAAATGCCTGAGAGGAATGTTGTTTCGTGGAATTCGATGGTGGTTGGGTTGATTAGGAATGGTGACTTGGATGAGGCGAGAAAGGTTTTTGATGATGCGCCTTTTAAAAATGTGGTGTCTTGGAATGCTATGATTGAAGGTTATGTTGAAAATGGTGGAATGGATGAAGCAAGAGTTTTGTTTGATCAAATGGGGTGTAGGAATGTGATCAGTTGGACTAGTATGATATCTGGGTATTGTCGTGTGGGTGATGTGGATGAGGGTTTTCGTTTGTTCTGGATTATGCCAGAGAAAAATGTTGTTTCTTGGACTGCGATGATTGGTGGGTTCACTTGGAATGGATTCTATCGAGAGGCGCTGTTACTTTTTCTTCAGATGGTGACGAATTCTAATGTGAAGGCTAATGGGGAGACTTTTGTTTCTCTTGTCTATGCATGTGCTGGCTTGGGGTTTCCTTGTGCTGGCAAGCAATTGCATGCTCAGATGATTGCTAACAGATGGGAGCTTGATGATTATGATGGTAGGTTAGGGAGAAGTCTTGTTAGGATGTATTCTGTGTGTGGTCTTATGGAGTCTGCACGCAGTGTGTTTGAAGGTTGTCTGAAAAATTGGGATGACCAGTCTTTCAATTCTATGATAAATGGTTACGTTCAGTCTGGTCAGTTAGAAAAGGCTCAAGAGTTGTTTGACATGGTCCCTATTCGAAACAAAATTGCATCGACTTGCATGATTTCTGGATACCTTAGTGTTGGACAAGTATTAAAGGCATGCAATCTCTTTGATGACATGCCTGATAGTGATAAGGATTCGGTTGCATGGACTTCAATGATTTATGGGTATGTTCAAAATGAGCTAATTGCTGAAGCCATCAGCTTATTTACTAAAATGATGGCTCAAGGTGTTTCCCCTATAAATTCTACTTATGCTGTTCTTTTTGGAGCTGTGGGATCTGTTGCATATCTTGATCTGGGGCGGCAATTACATGCTATGCAGTTAAAGACTATATATGAATATGAATATGATGTGTACCTTGAAAACTCTTTGATTTCAATGTATGCAAAATGTGGGGAGATAGAGGATGCATATAGGATATTCTCAAACATGACTTGTCGAGACAAAGTTTCTTGGAACTCCACGATCATGGGTCTTTCGGATCATGGGAGGACTTTTGAAGCTTTGAAGATGTACGAAACCATGGTTGAATTTGGGGTTTACCCAGATGCTGTTACTTTCCTCGGTGTCCTAACAGCATGTGCTCATGCTGGTTTTGTTGATAAAGGGTTGGGGTTATTTAGTATAATGGTCAATGATTATGCACTTCAACCTGGCTTGGAGCATTATGTTAGCATTATCAACCTATTGGGCCGAGCAGGAAGAGTGAGGGATGCAGAGGAGTTTGTGTTGAGGCTACCTGTTGAGCCAAATCATGCCATTTGGGGGGCATTGATTGGAGTATGTGGTTTGAGTAAAACACATGCAGATGTTGCTAGACGCGCAGCCACACGACTGCTCGAGTTGGATCCTCTGAATGCACCGGGTCATGTAACCCTTTGCAACATATATGCCGCAAATGATAAGCACCTTGAGGAGATAAGTTTAAGAAGAGAAATGAGGATGAAAGGTGTGAGGAAGGCACCTGGATGTAGTTGGATATTAGTGAAGGGTAGAGTTCATGTTTTCTCGTCTGGAGATAGATTAGATCCACAAGGAGAAGATATGTTGCTACAAATTTGA 2241 0.4221 MQVLQHSSILLQLIRGSSLILRRFSLPISNNQNHSQPSKPLFPFPRKYDYDESQLLHYLTKGLLHEARSILHSSPCGNLHSRVVHWTSLLTFYAKHGYIEEARNLFDIMPHRNIVTYNAMLSAYLQSGMLQQGQMFFYDMPVRNVVSWTAMLSGLADAGRIDDARKVFDEMPERNVVSWNSMVVGLIRNGDLDEARKVFDDAPFKNVVSWNAMIEGYVENGGMDEARVLFDQMGCRNVISWTSMISGYCRVGDVDEGFRLFWIMPEKNVVSWTAMIGGFTWNGFYREALLLFLQMVTNSNVKANGETFVSLVYACAGLGFPCAGKQLHAQMIANRWELDDYDGRLGRSLVRMYSVCGLMESARSVFEGCLKNWDDQSFNSMINGYVQSGQLEKAQELFDMVPIRNKIASTCMISGYLSVGQVLKACNLFDDMPDSDKDSVAWTSMIYGYVQNELIAEAISLFTKMMAQGVSPINSTYAVLFGAVGSVAYLDLGRQLHAMQLKTIYEYEYDVYLENSLISMYAKCGEIEDAYRIFSNMTCRDKVSWNSTIMGLSDHGRTFEALKMYETMVEFGVYPDAVTFLGVLTACAHAGFVDKGLGLFSIMVNDYALQPGLEHYVSIINLLGRAGRVRDAEEFVLRLPVEPNHAIWGALIGVCGLSKTHADVARRAATRLLELDPLNAPGHVTLCNIYAANDKHLEEISLRREMRMKGVRKAPGCSWILVKGRVHVFSSGDRLDPQGEDMLLQI 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07583 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 82 116 IPR002885 -
Vifa1g07583 746 Pfam PPR repeat 410 434 IPR002885 -
Vifa1g07583 746 Pfam PPR repeat 515 539 IPR002885 -
Vifa1g07583 746 Pfam PPR repeat 177 201 IPR002885 -
Vifa1g07583 746 Pfam PPR repeat 84 114 IPR002885 -
Vifa1g07583 746 Pfam PPR repeat 270 297 IPR002885 -
Vifa1g07583 746 Pfam PPR repeat 146 176 IPR002885 -
Vifa1g07583 746 Pfam PPR repeat 239 269 IPR002885 -
Vifa1g07583 746 Pfam PPR repeat 615 636 IPR002885 -
Vifa1g07583 746 Pfam PPR repeat 115 144 IPR002885 -
Vifa1g07583 746 Pfam PPR repeat 377 400 IPR002885 -
Vifa1g07583 746 Gene3D Tetratricopeptide repeat domain 405 508 IPR011990 GO:0005515
Vifa1g07583 746 NCBIfam pentatricopeptide repeat 440 472 IPR002885 -
Vifa1g07583 746 NCBIfam pentatricopeptide repeat 146 177 IPR002885 -
Vifa1g07583 746 NCBIfam pentatricopeptide repeat 177 201 IPR002885 -
Vifa1g07583 746 NCBIfam pentatricopeptide repeat 410 435 IPR002885 -
Vifa1g07583 746 NCBIfam pentatricopeptide repeat 208 235 IPR002885 -
Vifa1g07583 746 NCBIfam pentatricopeptide repeat 377 400 IPR002885 -
Vifa1g07583 746 NCBIfam pentatricopeptide repeat 515 546 IPR002885 -
Vifa1g07583 746 NCBIfam pentatricopeptide repeat 543 577 IPR002885 -
Vifa1g07583 746 NCBIfam pentatricopeptide repeat 239 261 IPR002885 -
Vifa1g07583 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
Vifa1g07583 746 Pfam PPR repeat family 541 588 IPR002885 -
Vifa1g07583 746 Pfam PPR repeat family 437 483 IPR002885 -
Vifa1g07583 746 Pfam PPR repeat family 205 238 IPR002885 -
Vifa1g07583 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Vifa1g07583 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Vifa1g07583 746 Gene3D Tetratricopeptide repeat domain 514 733 IPR011990 GO:0005515
Vifa1g07583 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 236 IPR002885 -
Vifa1g07583 746 Pfam E motif 663 720 IPR046848 -
Vifa1g07583 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Vifa1g07583 746 FunFam Pentatricopeptide repeat-containing protein At1g32415, mitochondrial 237 336 - -
Vifa1g07583 746 FunFam Pentatricopeptide repeat-containing protein 174 236 - -
Vifa1g07583 746 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 248 742 IPR046960 GO:0003723|GO:0009451
Vifa1g07583 746 SUPERFAMILY TPR-like 552 695 IPR011990 GO:0005515
Vifa1g07583 746 SUPERFAMILY TPR-like 57 233 IPR011990 GO:0005515
Vifa1g07583 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 510 540 IPR002885 -
Vifa1g07583 746 FunFam Pentatricopeptide repeat-containing protein 512 728 - -
Vifa1g07583 746 Gene3D Tetratricopeptide repeat domain 140 203 IPR011990 GO:0005515
Vifa1g07583 746 Gene3D Tetratricopeptide repeat domain 265 341 IPR011990 GO:0005515
Vifa1g07583 746 Gene3D Tetratricopeptide repeat domain 342 404 IPR011990 GO:0005515
Vifa1g07583 746 Gene3D Tetratricopeptide repeat domain 204 264 IPR011990 GO:0005515
Vifa1g07583 746 Gene3D Tetratricopeptide repeat domain 51 139 IPR011990 GO:0005515
Vifa1g07583 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07583 Vifa-Chr1 1177039875 1177042115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07583 106 742 Glycoside Hydrolase AT3G49170 30.758 1.86e-81 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07583 - - gmx:102669560 1077