Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07563 ATGACAACAACTGTTCACCTTTCTTCCCCTACGTGTCTCTTCAAATCCCACAATCTCAAACTCTCTTCCTCCAATTCCATCTCTCAACTTCCATTTCATTCTAACCTCCCATCCAAACGCTCACCCTCAACTCTCACCATAACCTCCTCCACGCGATCACATCAAGAACGAACCAAAACCAAGATCGTTTGTACTATTGGTCCTTCTACCAGCTCACCTCACATGATTTCAGAACTCGCCGAATCCGGAATGAATGTAGCGCGTTTGAACATGTCACATGGTGACCATGCATCGCACCAGAAAACTATAGATTTCGTTAAACAATACAATTCTCTATTTCAAGACAGACTTATATCCATCATGCTTGACACCAAGGGTCCTGAGGTTAGAAGTGGAGATGTGCCACAACCAATATTGCTCAAAGAGGGCCAAATGTTTAATTTCACTCTTAACAGAGGGGTTTGCACACACGATACTGTTAGTGTCAATTATGATGATTTTGTCAACGATGTTGAGGATGGAGATGTACTTCTCGTTGACGGAGGAATGATGTCTCTTGTTGTTAGGTCCAAGACAAAAGACTTGGTTAAATGTCAAGTTATTGACGGGGGAGAACTCAAATCTAGGCGTCATTTGAATGTTCGTGGAAAAAGTGCAACACTTCCTTCCATAACTGACAAGGACTGGGAAGATATTAAGTTTGGGGTAGACAATCAAGTAGACTTCTATGCTGTGTCATTTGTCAAGGATGCTAGAGTGGTTTATGAGCTAAAAGAATACCTCAAAAAACACAATGCTGATATACATGTGATTGTAAAAATTGAAAGTGCTGATTCCATACCAAATCTTCACTCTATACTTTCAGCTTCAGACGGGGCCATGGTTGCTCGGGGGGACCTTGGAGCTGAACTTCCGATAGAAGAAGTTCCTTTATTGCAGGAGGACATCATTAGAAGGTGTAACAGAATGCAAAAGCCAGTTATTGTGGCTACAAATATGCTTGAAAGCATGATTATACATCCCACACCAACTAGAGCGGAAGTCTCAGACATTGCCATTGCAGTAAGACAAGGTGCCGATGCTGTCATGCTTTCAGGAGAAACTGCACATGGAAAATATCCATTGAAATCTGTTAAAGTTATGCATGCGGTGGCTCTGAGGAATGAATCCAATGTTTTTAGAAGTGTTGCTTATCCAAATCATTTGAGTTTCCACAAGAGTCATATGGGAGAAATGTTTGCTTTCCATGCAACAACTATGTCTAACACTCTTAATACTCCTATTATCGTGTTCACTAGAACTGGATCCATGGCTATTCTTTTGAGCCATTATAGGCCCAACTCAACAATATTTGCATTCACAAATGAAGGAAGGATTAAGCAGAGGTTGGGACTTTATCATGGTGTTATGCCTATATACATGCAATTTTCAAATGATTCAGAGGAGACTTTTGCTAGAGCCCTCAAGCTACTATTGAGTAAAGGTCATTTACAAGAGGGACAATATGTTACACTTGTTCAAAGCGGAGCACAACCAATCTGGCGTAACAAATCCATTCATCACATTCAAGTTCGCGAGGTTCATGGATAA 1590 0.4094 MTTTVHLSSPTCLFKSHNLKLSSSNSISQLPFHSNLPSKRSPSTLTITSSTRSHQERTKTKIVCTIGPSTSSPHMISELAESGMNVARLNMSHGDHASHQKTIDFVKQYNSLFQDRLISIMLDTKGPEVRSGDVPQPILLKEGQMFNFTLNRGVCTHDTVSVNYDDFVNDVEDGDVLLVDGGMMSLVVRSKTKDLVKCQVIDGGELKSRRHLNVRGKSATLPSITDKDWEDIKFGVDNQVDFYAVSFVKDARVVYELKEYLKKHNADIHVIVKIESADSIPNLHSILSASDGAMVARGDLGAELPIEEVPLLQEDIIRRCNRMQKPVIVATNMLESMIIHPTPTRAEVSDIAIAVRQGADAVMLSGETAHGKYPLKSVKVMHAVALRNESNVFRSVAYPNHLSFHKSHMGEMFAFHATTMSNTLNTPIIVFTRTGSMAILLSHYRPNSTIFAFTNEGRIKQRLGLYHGVMPIYMQFSNDSEETFARALKLLLSKGHLQEGQYVTLVQSGAQPIWRNKSIHHIQVREVHG 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07563 529 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 49 392 IPR015813 GO:0003824
Vifa1g07563 529 SUPERFAMILY PK beta-barrel domain-like 127 218 IPR011037 -
Vifa1g07563 529 FunFam Pyruvate kinase 223 388 - -
Vifa1g07563 529 Pfam Pyruvate kinase, alpha/beta domain 417 507 IPR015795 -
Vifa1g07563 529 ProSitePatterns Pyruvate kinase active site signature. 268 280 IPR018209 GO:0004743|GO:0006096
Vifa1g07563 529 Gene3D - 389 507 IPR036918 -
Vifa1g07563 529 PRINTS Pyruvate kinase family signature 240 254 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa1g07563 529 PRINTS Pyruvate kinase family signature 116 132 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa1g07563 529 PRINTS Pyruvate kinase family signature 297 321 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa1g07563 529 PRINTS Pyruvate kinase family signature 270 296 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa1g07563 529 PRINTS Pyruvate kinase family signature 347 365 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa1g07563 529 PRINTS Pyruvate kinase family signature 366 382 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa1g07563 529 PRINTS Pyruvate kinase family signature 322 346 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa1g07563 529 MobiDBLite consensus disorder prediction 30 53 - -
Vifa1g07563 529 Pfam Pyruvate kinase, barrel domain 59 393 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa1g07563 529 PANTHER PYRUVATE KINASE 49 505 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa1g07563 529 MobiDBLite consensus disorder prediction 30 58 - -
Vifa1g07563 529 Gene3D - 127 222 IPR015806 GO:0004743|GO:0006096
Vifa1g07563 529 SUPERFAMILY PK C-terminal domain-like 377 524 IPR036918 -
Vifa1g07563 529 Gene3D - 59 388 IPR040442 -
Vifa1g07563 529 NCBIfam pyruvate kinase 59 524 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07563 Vifa-Chr1 1174625947 1174634112 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07563 K00873 - gmx:100776984 805.823