Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07554 ATGTTCCCAATAGTGCATGTTGGAAGTGGCAAAGAAATGACAATGGGTGAGAGTGAGAATGAAAAAATCATTGTGAAGTGGAACAAAAGTGCGCATGTTTTTGGTGAGAGGCTAATGAGATATCCTAGTTTAGGTTGGAAGGTTATATGGAATGTTGGATATGAAGATCCAAGAAGGGTGATCCATGCATTTAAAGTTGGTTTGTCTCTCACTTTAGCTTCTTTGTTGTATTTGTTGGAGCCTATTTACAATGAGATGGGACAGAGTGCAATTTGGGCTGTCATGACTGTGGTGGTTGTGCTTGAGTTTACTGCTGGAGCAACTTTATGCAAAGGTCTTAACAGAGGATTAGGGACACTAATAGCTGGATTATTGGCCTTCATGGTTGGATACATTGCAAATGCATCATCTGGTAGAATCTCTCAAGCTGTTATCATTGGTGCTGCAATTTTTTTTATAGGAGCTTTAGCTACTTATATGAGATTCATTCCTTATATAAAGAAGAACTATGACTATGGTCTAGTTATTTTTCTCATGACTTTTAATTTGATTGCTTTGTCAAGCTATCGTGTGGAAAACGTCTTGAAGATAGCACACGATCGCTTATTCACCATTGCCGTGGGTTGTGCCATTTGCCTTATAATGAGCCTGTTGATGTTTCCAAATTGGTCAGGAGAAGATCTCCATAATTCTACTGCTTTCAAGCTTGAAGGCCTTGCCAAATCTATCGAGGCTTGTGTCAATGTATACTTTTATGGCGAAACCGATAGCCCTGAAGATAGCAACTCGTCCGAGGATCCGATATACAAAGGTTATAAGAATGTTTTGGATTCAAAATCCATTGATGAAATGCTGGCATTGCATGCAAGTTGGGAGCCAAGACATTCTAGGTACTGTCACAAATTTCCATGTCAACAGTATGTCAAAGTTGGAGCTGTTCTTCGCCAATTCAGTTACACCGTGGTTGCTCTACATGGCTGTTTGAGGTCAGAAATTCAGACACCAAGATCAGTTAGAGCCATGTTTAAGGATCCATGCATAAGGGTTGCAGCAGAAGTATCAAAAGTATTAATAGAACTTTCCACCAGTATAAGGAACCGTCGCCATTGCTCGCCCGAAATACTGTCTGATCATCTTCATGAAGCTCTGCAGGATCTCAACAATGCCATAAAGTCTCAACCTCGTCTCTTCTTAGGCTCAAAGCACAAACACAACCATGCAAACAACATGCTCAAACTAGCTGCTGCACAGCTCGGTCAACACGGAAAAGCATCCGGATTCTCTTTATCAAGTGTTAAAACCGACTCTTCCGCGTTGCTTGAATGGAAAACAAAAAGAGATTCGTTAATACAATCGAAGGAAAACGAGAGAAAATCTTTGAGACCTCAATTGAGTAAAATTGCTATTACTAGTCTTGAATTCTCTGAGGCGCTTCCTTTTGCTGCTTTTGCATCTTTGCTTGTGGAAACAGTTGCGAAATTGGATTTGGTTATCGAGGAAATTGAAGAACTTGGAAGATTATCTTGCTTTAAAGAGTTTAGAGCTGGTGATGAGATTGTTGTGACTTGTGAGGAGCCTCTAGTTGATGTTACACGGAACAACTTACCTTCACATGGAATTGAATAG 1626 0.4022 MFPIVHVGSGKEMTMGESENEKIIVKWNKSAHVFGERLMRYPSLGWKVIWNVGYEDPRRVIHAFKVGLSLTLASLLYLLEPIYNEMGQSAIWAVMTVVVVLEFTAGATLCKGLNRGLGTLIAGLLAFMVGYIANASSGRISQAVIIGAAIFFIGALATYMRFIPYIKKNYDYGLVIFLMTFNLIALSSYRVENVLKIAHDRLFTIAVGCAICLIMSLLMFPNWSGEDLHNSTAFKLEGLAKSIEACVNVYFYGETDSPEDSNSSEDPIYKGYKNVLDSKSIDEMLALHASWEPRHSRYCHKFPCQQYVKVGAVLRQFSYTVVALHGCLRSEIQTPRSVRAMFKDPCIRVAAEVSKVLIELSTSIRNRRHCSPEILSDHLHEALQDLNNAIKSQPRLFLGSKHKHNHANNMLKLAAAQLGQHGKASGFSLSSVKTDSSALLEWKTKRDSLIQSKENERKSLRPQLSKIAITSLEFSEALPFAAFASLLVETVAKLDLVIEEIEELGRLSCFKEFRAGDEIVVTCEEPLVDVTRNNLPSHGIE 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07554 541 Coils Coil 540 541 - -
Vifa1g07554 541 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 46 513 - -
Vifa1g07554 541 Pfam Aluminium activated malate transporter 50 505 IPR020966 GO:0015743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07554 Vifa-Chr1 1172288937 1172292060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07554 5 526 Miscellaneous Gene Families AT4G17970 60.428 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07554 K25841 - gmx:100819748 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07554 1 1172288937 1172292060 Vifa1g07554 1 1172288937 1172292060 ECH