Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07541 ATGGCTACAGCAATGAACTTGTTAGAAACACTAGGCAACTTAGAGAGAGAATCATTCCTATCTCTTCTCTCAAACCTCATTGGTGAATCCAGACACGTGCAAAACAATCCACCGGAACTCATTCCTGAAGAGGATAGAGTAGTGAAGCATGTGTTAAACTCACTCCTACCCTCCAGCACCACCACCGGCGGTGGTCCCTTAATCCTCAACCACGTTACTTATCTTCCCGGCAGAGGTAATCTCATCGTCGAGTACCCCGGAACTGTTCCCGGCAAGATTCTCTCCTTTGTTGGCTGCCACATGGATGTTGTCACTGCAAATCCCAAAGATTGGGATTTTGATCCGTTTACTTTGAGCATCGATGGTGATAAGCTTAGGGGCCGTGGAACTACGGATTGTTTGGGACATGTGGCACTTGTTACTGAGCTCATGAGGAAGCTTGGTGAAACAAAGCCAGATTTGAAATCAACTGTAGTTGCTGTTTTTATAGCTAATGAAGAGAATGGTGTTGTAACTGGAGTTGGTATTGATGCACTTGTTCAACATGGTCTTCTCAATAAGCTAAAACAAGGTCCCATGTTTTGGATCGACTCAGCTGGTAAACAACCATGTATTGGAACTGCTGGTATGATAGCTTGGAAACTTCATGTCACTGGGAAACCTCTTCACAGCGGATTATCTGATAAGGCTATAAATTCACTCGAGCTAGCCATGGACGCGATAAAGGAAATTCAGCTGCAATTTTACAGGGACTTCCCACCACATCCTCAGGAACAAGCTTATGGGTTTGCAATCCCTTCCACCTTGAAACCAACCCAATGGAGTTATCCTAGTGGCGGAATCAATCAAATTCCGGGGGAATGTACTATTTCAGGAGATGTCAGGTCAACTCCATTCTACGATGTGAAGGATGTAAAGATGAAGCTGCAAGAATATGTGGATGACATAAATGAGAATGTACAGAAGCTAGAATCTCGGGGTCCAGTTTCAAAATATGTCCTATCAGATGAAAACTTAAGGGGGAGACTTACTCTAACTTTTGATGAGGTTTTACCTGGAGTTGCATGTGATCTTAATTCGAGAGGCTTCCATGTTTTATGCAAAGCAACTGAGGAAGTAGTTGGGAATGTAAAGCCTTTCTCAGTTACCGGGAGTTTGCCTCTCATTCGGGAACTTCAGGATGAAGGTTTTGATGTTCAGTCTTGTGGCTATGGTTTGACAGAAACTTACCATGCCAACAATGAGTATTGTCTTTTTACTGATATGTCTCAAGGATACCAGGTGTTAGGGAGTATCATCACTCAGTTAGAAGATTGA 1317 0.4336 MATAMNLLETLGNLERESFLSLLSNLIGESRHVQNNPPELIPEEDRVVKHVLNSLLPSSTTTGGGPLILNHVTYLPGRGNLIVEYPGTVPGKILSFVGCHMDVVTANPKDWDFDPFTLSIDGDKLRGRGTTDCLGHVALVTELMRKLGETKPDLKSTVVAVFIANEENGVVTGVGIDALVQHGLLNKLKQGPMFWIDSAGKQPCIGTAGMIAWKLHVTGKPLHSGLSDKAINSLELAMDAIKEIQLQFYRDFPPHPQEQAYGFAIPSTLKPTQWSYPSGGINQIPGECTISGDVRSTPFYDVKDVKMKLQEYVDDINENVQKLESRGPVSKYVLSDENLRGRLTLTFDEVLPGVACDLNSRGFHVLCKATEEVVGNVKPFSVTGSLPLIRELQDEGFDVQSCGYGLTETYHANNEYCLFTDMSQGYQVLGSIITQLED 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07541 438 Coils Coil 306 326 - -
Vifa1g07541 438 Pfam Peptidase dimerisation domain 205 318 IPR011650 -
Vifa1g07541 438 Pfam Peptidase family M20/M25/M40 97 434 IPR002933 GO:0016787
Vifa1g07541 438 Gene3D - 208 325 - -
Vifa1g07541 438 Gene3D Zn peptidases 14 202 - -
Vifa1g07541 438 SUPERFAMILY Zn-dependent exopeptidases 16 436 - -
Vifa1g07541 438 FunFam Acetylornithine deacetylase, putative 13 204 - -
Vifa1g07541 438 PANTHER ACETYLORNITHINE DEACETYLASE 6 437 - -
Vifa1g07541 438 SUPERFAMILY Bacterial exopeptidase dimerisation domain 209 319 IPR036264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07541 Vifa-Chr1 1169585522 1169587622 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07541 K01438 - gmx:100814676 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07541 1 1169585522 1169587622 Vifa1g07541 1 1169585522 1169587622 ECH