Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07509 ATGCGTTTCTTTCTTCTCTTTTTCTTTCTCTTCCATTTCCGTTTTCAGAACATTCTTTCTTCTCCAATCTCAGAATACCTCGCACTTCTTTCCCTCCGTGAAGCAATTACCGATTCTACCCCTCCTGTTCTCTCTTCATGGAACATCTCAACCACACACTGTATCTGGTTAGGTGTCACATGCGACGCACGCCGTCACGTCACCGGACTCAACCTCACCGGACTCAACCTCTCCGGCACACTCTCCGATAATCTCGCTCATTTCCCGTTTCTCTCTAACCTCTCTTTAGCTGATAACAAATTCTTCGGTCCCATCCCTCCGTCGCTCTCTGCCGTCTCCGGTCTCCGGCTACTCAACCTCTCCAACAATGTCCTCAACGGAACTTTTCCGACCGAGCTTTCGCAACTCAAGAGCCTCGAGATTCTTGACTTGTACAACAACAACATGACCGGAACACTTCCTCTTGCTGTCACCGAGTTGCCGAATCTCCGTCATTTGCATCTCGGTGGTAACTACTTTACCGGCCAGATCCCGCCGGAGTATGGACTATGGCAAAACTTAGAGTATTTAGCTGTTTCCGGTAACGAACTAGCCGGAACTATCCCGCCGGAGATTGGGAACTTAACCAGTCTCCGTGAGCTTTACATCGGATATTTCAATACCTACAACGGTGGCATTCCTCCGGAGATTGGAAACTTAACGGAGCTTATCCGTCTCGACGCAGCTTACTGCGGTTTATCCGGCGAGATACCGCCGGAGATGGGGAAGCTTCAGAATCTAGACACACTATTTCTTCAGGTGAATGCACTTTCAGGTTCTCTTACATGGGAGCTTGGGAATTTGAAAAGCTTGAAATCCATGGATTTGTCTAACAACGTGTTAACCGGTGAGATTCCGACGAGTTTCGGTGAACTGAAGAATCTCACGCTTCTTAACCTTTTTAGAAACAAACTTCACGGTGCTATACCGGAGTTTGTTGGAGATATGCCGGCGTTGGAGGTTGTTCAGCTGTGGGAGAATAACTTCACCGGTAACATACCGATGAGTTTGGGAAGAAACGGAAGGTTAACTCTTCTGGATCTTTCTTCAAACAAGTTAACTGGTACACTTCCACCTTATCTGTGTTCTGGGAATCATCTTCAAACTCTGATAACTCTTGGGAATTTTCTGTTTGGTCCAATTCCTGAATCTCTTGGTACTTGTGAATCTCTGAATAGGATTCGAATGGGTGATAATTTTCTGAATGGTTCGATTCCTAAGGGTCTTTTCGGACTTCCGAAACTAACTCAGGTTGAGCTTCAGGATAATTTTCTATCTGGAAATTTTCCTGAGACTCATTCTGTTTCTGGTAATCTTGGTCAGATTACTCTCTCAAACAATCAGCTTTCTGGACCATTGCCTCCTTCTATTGGTGATTTTTCCAGCATGCAGAAGCTTCTTCTTGATGGTAACATGTTTTCTGGTAAGATTCCGTCGCAGATTGGAAGGTTGCAACAGCTTTCGAAGATTGATTTTAGTCATAACAAGTTTTCTGGTCCTATTGCCCCTGAGATTAGTCAATGCAAGCTTTTAACTTTTGTTGATCTTAGTCGAAATGAGTTATCAGGGGTTATTCCCAATGAGGTTACTGGTATGAGGATATTGAATTACTTCAATATATCTAGAAATCATTTAGTTGGGAGTATTCCTGGTTCTATAGCTTCAATGCAAAGCTTAACTTCTGTTGATTTTTCGTATAACAATCTATCTGGTTTGGTTCCTGGTACCGGTCAATTCAGTTACTTTAACTACACGTCTTTCTTGGGAAATCCTGATCTCTGTGGCCCTTATTTGGGTGCTTGTAAAGACGGTGTTGTGAATGACGCTAATCAATCTCATCACGATAAGGGTCATATTTCTTCTACTGTGAAGCTACTACTTGTTATTGGGTTGCTTGCATGCTCCATTGTGTTTGCTATTGCTGCGATATTCAAGGCTCGGTCTTTGAAGAAGGCGAGTGAGGCCCGTGCGTGGAAATTGACCTCATTTCAACGTTTGGACTTCACTGCTGATGATGTTTTGGTTTCCTTGAAGGAGGATAATATCATAGGAAAGGGAGGTGCTGGCATTGTTTATAAAGGGACAATGCCGAATGGGGAACTTGTTGCTGTTAAAAGGCTTCCGGTTATGAGTAGAGGTTCATCTCATGATCATGGATTCAATGCTGAGATTCAGACATTGGGGAGAATCCGACATAGGCACATTGTTAGGCTGTTGGGTTTCTGTTCAAGTCAGGAGACAAATCTTTTGGTTTACAAGTACATGCCTAATGGAAGTTTAGGTGAAGTTCTTCATGGAAAGAAAGGGGGTCATTTGTATTGGGATACCAGGTATAAAATCGCTGTGGAGGCTGCCAAGGGACTTTGCTATCTACACCATGATTGTTCTCCACTTATTGTTCATCGAGATGTCAAATCAAACAATATACTTCTTGATTCTAATTATGAAGCCCATGTTGCTGATTTTGGGCTGGCTAAGTTCCTGCAAGATTCCGGAACATCCGAATGCATGTCCGCTATTGCTGGTTCATATGGATACATAGCTCCAGAGTACGCGTACACTTTGAAAGTTGATGAGAAAAGCGATGTCTACAGCTTCGGTGTCGTTCTTTTAGAGCTTGTAACTGGAAGGAAACCAGTAGGAGAATTCGGCGACGGTGTGGACATTGTGCAATGGGTGAGAAAAATGACAGACTCCAACAAAGAAGGAGTTCTAAAAGTCCTAGACCCTAGACTTTCATCAGTTCCACTTCATGAAGTCATGCATGTTTTCTATGTAGCCATTCTGTGTGTTGAAGAACAAGCAGTAGAAAGACCAACTATGCGCGAAGTTGTTCAAATTCTGACCGAGCTTCCAAAGTCACCAGAGTCTAAACTAGGAGACTCGACAATTACAGAATCCTCTTTGTCACCATCAAACGGTTTAGAATCTCCAATTTCAGCCTCGAAAGATCATCAACGTCCTCCTCAATCACCACCGCCGGATCTCTTAAGTATTTGA 3039 0.4357 MRFFLLFFFLFHFRFQNILSSPISEYLALLSLREAITDSTPPVLSSWNISTTHCIWLGVTCDARRHVTGLNLTGLNLSGTLSDNLAHFPFLSNLSLADNKFFGPIPPSLSAVSGLRLLNLSNNVLNGTFPTELSQLKSLEILDLYNNNMTGTLPLAVTELPNLRHLHLGGNYFTGQIPPEYGLWQNLEYLAVSGNELAGTIPPEIGNLTSLRELYIGYFNTYNGGIPPEIGNLTELIRLDAAYCGLSGEIPPEMGKLQNLDTLFLQVNALSGSLTWELGNLKSLKSMDLSNNVLTGEIPTSFGELKNLTLLNLFRNKLHGAIPEFVGDMPALEVVQLWENNFTGNIPMSLGRNGRLTLLDLSSNKLTGTLPPYLCSGNHLQTLITLGNFLFGPIPESLGTCESLNRIRMGDNFLNGSIPKGLFGLPKLTQVELQDNFLSGNFPETHSVSGNLGQITLSNNQLSGPLPPSIGDFSSMQKLLLDGNMFSGKIPSQIGRLQQLSKIDFSHNKFSGPIAPEISQCKLLTFVDLSRNELSGVIPNEVTGMRILNYFNISRNHLVGSIPGSIASMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGACKDGVVNDANQSHHDKGHISSTVKLLLVIGLLACSIVFAIAAIFKARSLKKASEARAWKLTSFQRLDFTADDVLVSLKEDNIIGKGGAGIVYKGTMPNGELVAVKRLPVMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSSQETNLLVYKYMPNGSLGEVLHGKKGGHLYWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNYEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLSSVPLHEVMHVFYVAILCVEEQAVERPTMREVVQILTELPKSPESKLGDSTITESSLSPSNGLESPISASKDHQRPPQSPPPDLLSI 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07509 1012 Gene3D Ribonuclease Inhibitor 275 344 IPR032675 -
Vifa1g07509 1012 SUPERFAMILY Protein kinase-like (PK-like) 690 961 IPR011009 -
Vifa1g07509 1012 Gene3D Ribonuclease Inhibitor 345 618 IPR032675 -
Vifa1g07509 1012 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 768 978 - -
Vifa1g07509 1012 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 333 618 - -
Vifa1g07509 1012 ProSiteProfiles Protein kinase domain profile. 690 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07509 1012 MobiDBLite consensus disorder prediction 967 1012 - -
Vifa1g07509 1012 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 82 325 - -
Vifa1g07509 1012 Pfam Leucine Rich Repeat 283 305 IPR001611 GO:0005515
Vifa1g07509 1012 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 659 767 - -
Vifa1g07509 1012 Gene3D Phosphorylase Kinase; domain 1 659 767 - -
Vifa1g07509 1012 SMART LRR_typ_2 160 186 IPR003591 -
Vifa1g07509 1012 SMART LRR_typ_2 305 329 IPR003591 -
Vifa1g07509 1012 SMART LRR_typ_2 497 521 IPR003591 -
Vifa1g07509 1012 SMART LRR_typ_2 281 304 IPR003591 -
Vifa1g07509 1012 SMART LRR_typ_2 569 592 IPR003591 -
Vifa1g07509 1012 SMART LRR_typ_2 354 377 IPR003591 -
Vifa1g07509 1012 SMART LRR_typ_2 112 136 IPR003591 -
Vifa1g07509 1012 SMART serkin_6 690 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07509 1012 Gene3D Transferase(Phosphotransferase) domain 1 768 980 - -
Vifa1g07509 1012 SUPERFAMILY L domain-like 349 611 - -
Vifa1g07509 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672|GO:0006468
Vifa1g07509 1012 SUPERFAMILY RNI-like 69 391 - -
Vifa1g07509 1012 MobiDBLite consensus disorder prediction 969 999 - -
Vifa1g07509 1012 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 222 963 - -
Vifa1g07509 1012 Pfam Leucine rich repeat 114 172 IPR001611 GO:0005515
Vifa1g07509 1012 Pfam Protein tyrosine and serine/threonine kinase 692 961 IPR001245 GO:0004672|GO:0006468
Vifa1g07509 1012 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Vifa1g07509 1012 Gene3D Ribonuclease Inhibitor 178 274 IPR032675 -
Vifa1g07509 1012 Gene3D Ribonuclease Inhibitor 23 177 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07509 Vifa-Chr1 1165427485 1165430866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07509 12 991 Receptor kinase-like Gene Family AT5G65700 78.766 0.0 1573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa1g07509 PK_Tyr_Ser-Thr 7.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07509 - - ccaj:109800149 1743.78