Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07346 ATGGAGTCTGGGAAAGTGATCGGATTCGTTGGATTGGATGAAATTGGATTACAGATCGCATCCTCGCTTCTTCGCCATGGCTACGCTGTTCAAGCTTTCGAGATAAGTGATCCCATCATAAAAGAACTTGTAAAGATTGGAGGAATTAAATGTGCAAGCCCTTCAGAAGCAGGGAAAGGGGTAGCAGCTTTAGTTGTCCTTATATCTCACACAGATCAGATTCATGATCTGATTTTCGGGGACGAGGGTGCTTTAAAAGGTCTAAACCCAGATACAGTTCTTATAATTTGTTCAACCATACTACCATCAGCTCTCCATAAACTGGAGAAAGATTTGGAAGAATTTCAGAAGATAGCCTATGTTGTTGATGCATATGCCTCTTATGGGAGGTCTGATCTGTTGAAGGGAAAAGTCACTATTGTATCATCTGGAAGATCAGATGCCATTGCAAGAGTACGGCCTCTTCTTTCAGCAATGTGTGAAAAGCTGTTCACTTTTGAGGGTGAAATTGGTGGTGGCAGTAAGGCTAAAATGGTCTCTGTGATGCTGGAAGGAATTCATTTCATTGCTTCTGTGGAGGCTCTTTCTCTTGGTGTAAAAGCGGGAATTCATCCATGGATAATCTCTGATATAATTTCTAATGCCGCTGGAAATTCATGGGTATTCAAGAATAATGTTCCACTTTTGTTAAAGGGAGAGGTTAAGCATCAAATTCTTAATACTTTGATTAAGGAATTGGAAACAATTTTGGATATGGCTAAGTCACTTACTTTTCCACTTCCACTTTTGGCGACAACTCACCAACAACTTATTCATGGAATTTCACACGCTTGTTCCGAAAATGGTGGTGACACAACATTAATTAAGATTTGGGACAATGTTTATGGAGTGAAAGTTTCAGATGCAGCAAATGAAGAGGCATATAACCCTGAGAAACTTGCATCTGAAGTTATTACTTCTTCTAAAAGTGGGACTCGGGTTGGTTTTATTGGTCTTGGAGCTATGGGATTTGGCATGGCAACTCATTTGGTCAAATCAAACTTCAGCGTTTTCGGCTATGATGTGTATGAACCAACTCGAATCCGATTTTCAGATGCTGGTGGCTTTATTGGAAATTCTCCAGCGGAAGTCAGTAAAGATGTTGATGTTCTCATAATCATGGTTGCGAATGAAGTTCAAGCAGAGAATGTTTTATATGGAGAATCTGGTGCTGTTTCAGTTCTTCCTACGGGTGCATCTATCATTCTCTCTTCTACAGTTTCTCCGGCATATGTGAGTCAGCTAGAGCGTAGATTGCAAAATGGAGGAAAAAGTTTAAAGTTGGTGGACGCCCCTGTTTCTGGTGGTGTTCAGAGGGCATCATTGGGAACACTTACGATAATGGCTTCAGGGACTAATGATGCTCTCACGAGTGTCGGTAATGTCTTAGCAGCCTTGAGCGAAAAGCTTTATATTATCAAAGGTGTTTGTGGTTCTGGAAGTGGTATAAAGATGGTTAACCAATTGCTAGCTGGAGTTCATATTGCATCAGCTGCCGAGGCAATGGCATTTGCAGCAAGATTGGGTTTGAATACCAGATTATTGTTTGATTTTATTACAACTAGTGGGGGAACATCCTGGATGTTTGAAAATCGCGTTCCGCACATGCTAAACAATGATTACACACCTTATTCAGCACTTGATATCTTCGTGAAGGATATGGGAATCGTTACTCGTGAATCCGCTTCCTTAAAAGTTCCACTTCAACTATCAACTATAGTCCACCAACTGTATCTGTCAGGTTCTGCTGCTGGCTGGGGAAGAAAAGATGATGCTGGTGTTGTCAAGTTTTATGAGACACTTACTGGTGTTAGAGTGGAAGGAAAACTCGAGTCTCTCAGGAAAGATACCGTGTTGCATTCTCTTCCACCAGAGTGGTCTCAAGATCATGTTCTTGACATTCAAAAATTAAAAGAAAGCAGTTCAAAGATTTTGGTCGTTCTGGATGATGATCCAACAGGAACACAAACTGTTCATGATATTGAGGTATTAACAGAATGGACTGTTGATTCACTGATGGGGCAGTTTAGAAAAAGTCCAAAATGTTTTTTCATTTTGACAAATTCCAGGGCGCTGAGTTCTGACAAGGCCACTATATTGATAAAGGAGATTTGCAAAAATCTAGACACTGCAGCAAAATCAGTTGACAAAATTGATTATACGGTGGTTTTGAGGGGTGATTCAACTTTGCGCGGTCATTTTCCAGAGGAACCAGATGCTGTTACTTCAGTATTGGGTGAAATGGATGCATGGATTATTTGTCCATTTTTCCTTCAGGGAGGCCGTTACACTATTAACGATACACATTTTGTTGCTGATTCCGAACTGCTTATTCCTGCAGGAGAAACAGAGTTTGCCAAAGATGCTTCCTTTGGCTACAAATCTTCAAACCTACGTGATTGGGTAGAGGAGAAAACAAATGGCCGTATACTTGCAAGTAATGTCGTATCAATTTCTATCCACCTTTTGAGGAATGGGGGGCCAGATGCAGTTTGTCAGCATCTATGCAGTTTGCAGAAGGGGTCAGTATGCATAGTTAATGCAGCCAGTGAAAGAGACATGACTGTATTTGCACTTGGAATGATCAAGGCAGAGTTGTCAGGGAAACGTTTCTTGTGTCGCACTGCTGCTAGCTTTGTATCTGCCTGTCTCGGAATCATCTCTAAGCCTCCGGTGTTGCCAAAGGATCTAGGAATATCTAGAGAAAGGAATGGAGGTTTGATAATTGTGGGATCTTATGTTCCAAAAACGACAAAGCAGGTTGAGCAGCTTAAATTACAGTGTGGTCAGTTCTTAAGAAATATCGAGGTTTCTGTTGAAAAACTTGCAATGGGGTCTATTGAGGAGAGGGAGGATGAAATCAGTAGAGCAGCTGAATTAGCGGATGTATATCTTAAATCTCATAAAGACACACTTATAATGACCAGCCGAAATCTCATAACTGGGAAATCTGCCTCTGAGAGTTTGGACATTAACTATAAAGTGAGTTCTGCTCTGGTGGAAATATTGAAAAGAATAACGATAAAACCTCGTTACATAATTGCCAAGGGTGGTATTACCTCTTCAGACCTTGCTACAAAAGCGCTTGGTGCAAAATGTGCCAAGATTGTGGGACAAGCACTCGCCGGTATTCCTTTGTGGCAACTAGGCCCTGAAAGTAGACATCCCGGAGTTCCTTACATTGTCTTCCCAGGTAATGTTGGTGACAGCGGAGCATTGGCAGAAGTCGTGAAGTCCTGGACTTGTCCAACGGCACTTTCATCAACAAAAGAGATTCTTAACAATGCAGAAAAGGGTGGATATGCTGTTGGAGCATTTAATGTCTATAATTTGGAAGGAGTTGACGCTGTTGTTTCTGCTGCAGAAGAAGAGCAAAGTCCTGCAATATTACAGATTCATCCTGGTTCTTGGAAGCAAGGAGGAATTCCCTTGGTTGCTTGTTGCATTTCTGCTGCAGAGCGTTCTAGTGTGCCCATCGCTGTTCACTTTGATCATGGAACTTCAAAGCAAGATCTTATGGAAGCTCTTGAACTGGGGTTCAGTTCTATGATGGTGGATGGCTCACATCTTTTGTTTGATGAAAATGTTGCATACACAAAATTCATATCATTATTGGCTCACTCAAAAGATATGTTGGTTGAAGCTGAGTTGGGAAGATTGTCAGGGACAGAGGATGACTTGACTGTCGAAGAGTATGAAGCCAAGCTAACAGATGTTAATATGGCTGAAAAATTCATTGATGAGACTGGCATAGATGCTTTGGCTGTGTGTATCGGTAATGTGCATGGAAAGTACCCGGAAAGTGGACCAAAGCTCCGATTAGATTTGCTTAAGGAGCTGCATGCTTTGAGCCTGAAGAAAGGAGTTATTCTAGTGCTTCACGGTGCATCGGGTTTGGGCGAAGCCCTTGTTAAGGAATGCATAAATCTAGGTGTTAGAAAGTTCAATGTCAACACTGAAGTAAGACAAGCATACATGGACTCTCTCGTTACTCCCCAAAAAGATCTTGTTCATGTTATGGCTTCTGCAAAGGAAGCTATGAAAGCTGTGGTTGCAGAAAAGATGCGGCTGTTTGGTTCAGCAGGAAAAGCATGA 4134 0.4161 MESGKVIGFVGLDEIGLQIASSLLRHGYAVQAFEISDPIIKELVKIGGIKCASPSEAGKGVAALVVLISHTDQIHDLIFGDEGALKGLNPDTVLIICSTILPSALHKLEKDLEEFQKIAYVVDAYASYGRSDLLKGKVTIVSSGRSDAIARVRPLLSAMCEKLFTFEGEIGGGSKAKMVSVMLEGIHFIASVEALSLGVKAGIHPWIISDIISNAAGNSWVFKNNVPLLLKGEVKHQILNTLIKELETILDMAKSLTFPLPLLATTHQQLIHGISHACSENGGDTTLIKIWDNVYGVKVSDAANEEAYNPEKLASEVITSSKSGTRVGFIGLGAMGFGMATHLVKSNFSVFGYDVYEPTRIRFSDAGGFIGNSPAEVSKDVDVLIIMVANEVQAENVLYGESGAVSVLPTGASIILSSTVSPAYVSQLERRLQNGGKSLKLVDAPVSGGVQRASLGTLTIMASGTNDALTSVGNVLAALSEKLYIIKGVCGSGSGIKMVNQLLAGVHIASAAEAMAFAARLGLNTRLLFDFITTSGGTSWMFENRVPHMLNNDYTPYSALDIFVKDMGIVTRESASLKVPLQLSTIVHQLYLSGSAAGWGRKDDAGVVKFYETLTGVRVEGKLESLRKDTVLHSLPPEWSQDHVLDIQKLKESSSKILVVLDDDPTGTQTVHDIEVLTEWTVDSLMGQFRKSPKCFFILTNSRALSSDKATILIKEICKNLDTAAKSVDKIDYTVVLRGDSTLRGHFPEEPDAVTSVLGEMDAWIICPFFLQGGRYTINDTHFVADSELLIPAGETEFAKDASFGYKSSNLRDWVEEKTNGRILASNVVSISIHLLRNGGPDAVCQHLCSLQKGSVCIVNAASERDMTVFALGMIKAELSGKRFLCRTAASFVSACLGIISKPPVLPKDLGISRERNGGLIIVGSYVPKTTKQVEQLKLQCGQFLRNIEVSVEKLAMGSIEEREDEISRAAELADVYLKSHKDTLIMTSRNLITGKSASESLDINYKVSSALVEILKRITIKPRYIIAKGGITSSDLATKALGAKCAKIVGQALAGIPLWQLGPESRHPGVPYIVFPGNVGDSGALAEVVKSWTCPTALSSTKEILNNAEKGGYAVGAFNVYNLEGVDAVVSAAEEEQSPAILQIHPGSWKQGGIPLVACCISAAERSSVPIAVHFDHGTSKQDLMEALELGFSSMMVDGSHLLFDENVAYTKFISLLAHSKDMLVEAELGRLSGTEDDLTVEEYEAKLTDVNMAEKFIDETGIDALAVCIGNVHGKYPESGPKLRLDLLKELHALSLKKGVILVLHGASGLGEALVKECINLGVRKFNVNTEVRQAYMDSLVTPQKDLVHVMASAKEAMKAVVAEKMRLFGSAGKA 1377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07346 1377 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 491 618 IPR008927 -
Vifa1g07346 1377 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 7 164 IPR006115 GO:0050661
Vifa1g07346 1377 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 326 484 IPR006115 GO:0050661
Vifa1g07346 1377 NCBIfam ketose-bisphosphate aldolase 1099 1377 IPR000771 GO:0005975|GO:0008270|GO:0016832
Vifa1g07346 1377 SUPERFAMILY YgbK-like 658 1090 - -
Vifa1g07346 1377 Gene3D - 2 168 - -
Vifa1g07346 1377 Gene3D - 320 487 - -
Vifa1g07346 1377 ProSitePatterns 3-hydroxyisobutyrate dehydrogenase signature. 329 342 IPR002204 GO:0016491
Vifa1g07346 1377 CDD TBP_aldolase_IIB 1102 1375 IPR000771 GO:0005975|GO:0008270|GO:0016832
Vifa1g07346 1377 Gene3D - 911 1093 IPR042213 -
Vifa1g07346 1377 Gene3D - 488 620 IPR013328 GO:0016491
Vifa1g07346 1377 Gene3D Aldolase class I 1094 1377 IPR013785 -
Vifa1g07346 1377 SUPERFAMILY Aldolase 1101 1377 - -
Vifa1g07346 1377 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 163 IPR036291 -
Vifa1g07346 1377 PANTHER 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED 321 621 - -
Vifa1g07346 1377 Pfam Fructose-bisphosphate aldolase class-II 1101 1376 IPR000771 GO:0005975|GO:0008270|GO:0016832
Vifa1g07346 1377 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 169 296 IPR008927 -
Vifa1g07346 1377 Gene3D - 171 294 IPR013328 GO:0016491
Vifa1g07346 1377 Gene3D - 657 897 IPR037051 -
Vifa1g07346 1377 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 326 483 IPR036291 -
Vifa1g07346 1377 Pfam Sugar-binding N-terminal domain 658 895 IPR010737 -
Vifa1g07346 1377 Pfam Nucleotide-binding C-terminal domain 920 1086 IPR031475 -
Vifa1g07346 1377 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 171 281 IPR029154 GO:0051287
Vifa1g07346 1377 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 491 611 IPR029154 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07346 Vifa-Chr1 1132841124 1132857387 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07346 - - aip:107617544 2258.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07346 1 1132841124 1132857387 Vifa1g07346 1 1132841124 1132857387 ECH