Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07344 ATGTCCGTTCACCTCAAACTCTCTCATCCAAATCGTATCTATCGCCCTTCCGAACTGCTGAAAGGAACAATAATTGTAGAAACACAGTCTTCAATTTCACACTATGGAATTCGTATTACTATCAAAGGATCCGTCAATTTGCAGGTTCGTGGAGGATCAGCTGGGGTTGTTGAGTCATTGTATGGTGTTATTAAGCCCATTCCAATTGTGAAGAGGACCGTTGAGGTTAAACCTTCTGGAAAGATCGGTTCGGGCATGACAGAGGTACCGTTTTCATTGAATATTAGACAAGAAGAGAATTTAGAAAAGTTTTATGAGACTTTCCATGGGGCAGATATTAGTATCCAGTATTTAGCGACTGTAGATATATCTCGCGGATACTTGCATAAGTCTTTATCAGCAACGACGGAGTTCATTATTGAAAGTGATAAAGGCGATCTTCTACAAAGACCAATATCTCCAGAGACGGTCATCTTTTACATTACCCAAGACACTCAAAGACATCCTCTTCTTCCTGAATTAAAATCCGGTGGATTTCGGGTGACAGGAAAAATCTGTACTCAGTGTTCTTTGTCTAGTCCTATTAATGGAGAACTAACTGTTGAAGCGTCGGCAGTTCCAATTCAGTCGATTGACATCCAATTATTTCGCGTTGAATCTATTCTTCTTGGGGAGAAAATTGTGAGTGAAACCTCACTGATTCAAACAACTCAGATAGCAGATGGTAATGTGTGTCGCAATTTGACTATGCCTATCTATGTAATACTTCCTCGACTTTTGACCTGTCCAACAATCTTTGCTGGTCCCTTTTCAATTGAGTTCAAAGTTGCAATTGTTATAAGCTTTCAATCAGAGCTATCTAAATTGCATAAGAAGTCTGACTCAAGAACTCCAAGACTTTGGCTTGCAATGGAAACATTACCGCTCGAATTGGTTCGCACAATGTAA 948 0.3977 MSVHLKLSHPNRIYRPSELLKGTIIVETQSSISHYGIRITIKGSVNLQVRGGSAGVVESLYGVIKPIPIVKRTVEVKPSGKIGSGMTEVPFSLNIRQEENLEKFYETFHGADISIQYLATVDISRGYLHKSLSATTEFIIESDKGDLLQRPISPETVIFYITQDTQRHPLLPELKSGGFRVTGKICTQCSLSSPINGELTVEASAVPIQSIDIQLFRVESILLGEKIVSETSLIQTTQIADGNVCRNLTMPIYVILPRLLTCPTIFAGPFSIEFKVAIVISFQSELSKLHKKSDSRTPRLWLAMETLPLELVRTM 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07344 315 SUPERFAMILY E set domains 3 170 IPR014756 -
Vifa1g07344 315 Gene3D - 3 142 IPR014752 -
Vifa1g07344 315 Pfam Vacuolar protein sorting-associated protein 26 10 280 IPR028934 GO:0006886
Vifa1g07344 315 FunFam Vacuolar protein sorting-associated protein 26 182 289 - -
Vifa1g07344 315 FunFam Down syndrome critical region protein 3 1 143 - -
Vifa1g07344 315 Gene3D - 185 292 IPR014752 -
Vifa1g07344 315 PANTHER VACUOLAR PROTEIN SORTING 26 RELATED 11 291 IPR028934 GO:0006886
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07344 K25730 - gmx:100820593 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07344 1 1132692729 1132704588 Vifa1g07344 1 1132692729 1132704588 ECH