Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07343 ATGGCTAATTCAGAAGCAATAATGAAACAAGAAGAAGTTAAAGAAGATGAACGTGAAGTACAGAGAAGTTACTGGAAAGAACATTGTGCAGATTTGTCAGTTGAGTCAATGATGCTCGATTCTAACGCATCTCATCTAGACAAAGAAGAGAGACCAGAAGTGCTCTCTCTATTACCAGCATATGAAGGAAAATCAGTTTTAGAGCTTGGAGCAGGTATTGGAAGATTTACTTCTGAATTGGCTCTGAAAGCTGGACAATTGCTTGCTGTAGACTTCATTGAAACTGCAATAAAGAAGAATGAAAATACTAATGGACACCACAAGAATGTGAAGTTCATGTGTGCTGATGTGACATCTCCAAACTTGCATATTTCTGAAGGATCAGTTGATTTAATATTCTCAAATTGGTTACTCATGTATCTTTCAGATCAAGAAGTTAAAAATTTAGCTGAAAGAATGGTAAAATGGTTAAAAGTTGATGGGTATATATTCTTTAGAGAATCTTGTTTTCACAGATCTGGAGATTCAAAGAGAAAATACAATCCAACTCACTATAGGGAACCAAGATTTTACACTAAGGTATTTAAAGAGTGTCAAATAAGTGATGAAAATGGCAATTCCTTTGAGCTTTCTCTTGTTGGCTGCAAATGCATTGGAGCCTATGTTAGACATAAGAAGAATCAAAATCAGATTTGTTGGATATGGCAAAAAGTTAAATCTCAAGATGATAGAGGATTTCAAAGATTCTTAGACAGTGTTGAGTATAATCATAAGGATATCTTACTATATGAACATGTTTATGGTCAAGGCTTTGTTAGCACCGGAGGACTTGAAACAACTAGAGAAATTGTGGCAAAGTTAGACCTAAAGCCAGGTCAAAAAGTACTAGATGTTGGTTGTGGCATTGGAGGAGGTGCTTTTTACATGGCTGAAAATTTTGATGTTGAGGTTGTTGCCATTGACCTCTCCATAAACATGATTTCTCTAGCCATCGAACGCGCCATCGGACTCAAATACTCGGTAGAATTCGAATGTGTTGATTGCACTAAAAAAACATATCTTGAAAACACATTCGACGTAATCTATACTCGCGACACCTTGTTACATGTCAAAGACAAGCCAACATTGTTTAGATCATTTTATAAATGGTTGAAACCTGGAGGTACACTTTTAATTAGTGACTATTGCAAAAGTGTTGGAAGTCTTTCAATGGAATATGCAGAATACATCAAAAAGAGAGGATATTATATCCATGACATGAATTCATATTATAAGATGCTTGAGAATGCTGGATTTGATTATGTCATTGCTGAGGATCAAACCAATTTGTTCTTGAAAACTCTACAAATGGAGTTAAATGGCCTTGAGAATAATAAAGTTGACTTCATTGATGATTTCTCAGAGGATGATTACAATGAAATTGTTGAAAGATGGAAGGCCAAGCAGATGAGAGGCGTGGCTGGAGAGCAGATATGGGGCTTGTTCATTGCCAAGAAAATATGA 1503 0.358 MANSEAIMKQEEVKEDEREVQRSYWKEHCADLSVESMMLDSNASHLDKEERPEVLSLLPAYEGKSVLELGAGIGRFTSELALKAGQLLAVDFIETAIKKNENTNGHHKNVKFMCADVTSPNLHISEGSVDLIFSNWLLMYLSDQEVKNLAERMVKWLKVDGYIFFRESCFHRSGDSKRKYNPTHYREPRFYTKVFKECQISDENGNSFELSLVGCKCIGAYVRHKKNQNQICWIWQKVKSQDDRGFQRFLDSVEYNHKDILLYEHVYGQGFVSTGGLETTREIVAKLDLKPGQKVLDVGCGIGGGAFYMAENFDVEVVAIDLSINMISLAIERAIGLKYSVEFECVDCTKKTYLENTFDVIYTRDTLLHVKDKPTLFRSFYKWLKPGGTLLISDYCKSVGSLSMEYAEYIKKRGYYIHDMNSYYKMLENAGFDYVIAEDQTNLFLKTLQMELNGLENNKVDFIDDFSEDDYNEIVERWKAKQMRGVAGEQIWGLFIAKKI 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07343 500 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 262 499 IPR029063 -
Vifa1g07343 500 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 42 216 IPR029063 -
Vifa1g07343 500 Pfam Methyltransferase domain 285 435 - -
Vifa1g07343 500 Coils Coil 445 465 - -
Vifa1g07343 500 Pfam Methyltransferase domain 67 165 IPR013216 GO:0008168
Vifa1g07343 500 ProSiteProfiles Phosphoethanolamine N-methyltransferase (PEAMT) (EC 2.1.1.103) family profile. 1 500 IPR025771 GO:0000234|GO:0006656
Vifa1g07343 500 PANTHER PHOSPHOETHANOLAMINE METHYLTRANSFERASE 14 498 - -
Vifa1g07343 500 CDD AdoMet_MTases 66 165 - -
Vifa1g07343 500 Gene3D Vaccinia Virus protein VP39 18 249 IPR029063 -
Vifa1g07343 500 Gene3D Vaccinia Virus protein VP39 250 500 IPR029063 -
Vifa1g07343 500 CDD AdoMet_MTases 294 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07343 Vifa-Chr1 1132449250 1132459809 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07343 15 499 Acyl Lipid Metabolism Gene Families AT3G18000 71.340 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07343 K05929 - gmx:100818466 852.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07343 1 1132449250 1132459809 Vifa1g07343 1 1132449250 1132459809 ECH