Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07338 ATGATAACTCTAATAGATTTCTACCATGTCATGACAGCAATGGTGCCACTCTATGTTGCTATGATCTTAGCTTATGGATCAGTGAAATGGTGGAAGATATTCTCACCTGATCAATGTTCAGGAATCAACCGTTTTGTAGCACTTTTCGCTGTTCCACTTCTCTCCTTCCATTTCATAGCCTCAAACAATCCTTACAAAATGAACCTAAGATTCTTAGCAGCAGACACACTTCAAAAAATCATGATCCTCACCCTTCTCTTCATTTGGAGCAATTTCTCCAAAAGGGGTTCTCTAGAATGGACCATAACACTCTTCTCCCTCTCAACTCTCCCAAACACTTTGGTCATGGGAATCCCTTTACTCAAAGGAATGTATGGTGAATTCTCAGGTAGTTTAATGTTTCCAGACACTGCCGGTTCCATTGTTTCAATCCATGTTGATTCTGATGTCATGTCATTAGACGGTAGAACACCATTGGAAACCGATGCTGAAATCAAAGAAGATGGTAAACTTCATATCACTGTTAGAAAATCAAATGCTTCAAGATCAGATATCTACTCAAGAAGATCACAAGGTCTTTCTTCCAACACTCCTAGGCCTAGTAACCTTACCAATGCTGAGATTTACTCCCTCCAATCCTCACGAAACCCTACGCCTAGAGGCTCTAGTTTTAATCATACTGATTTTTACTCTATGATGGGTGCTGGAAGAAACTCTAACTTTGGTCCTTCTGATCTTAATAACTACGCTTTATCCGCTTCCAGAGGCGTTACTCCGAGGCCTTCTAACTACGAAGAAGATGCTTCCAATGCCAAGAAGTTGAAGCATTATCCTGCTCCTAATCCGGGGATGTTTTCGCCTACCAATAAAAATCTTGGTTCCAATGTTAATGTCAAGAGAAGTAATGGTCAGAATCAGAATCAGAATCAGAATCAGCAGAAACAAGATGATCTTCATATGTTTGTTTGGAGTTCTAGTGCTTCACCGGTTTCTGATGTCTTTGGTGGACATGAATTTGGTTCTCATGATCAGAAAGAAGTTAAATTGAACGTGTCTCCAGGAAAAGTGGAGGGTCATAGAGAAACTCAAGAGGACTATTTGGAGAAAGATGAATTCAGCTTTGGAAATAGAGGAATGGAAAGGGAAATGAATAATCAACAACATGATGAAGGTGAAAAAATTGGAGATGGAAAATCAAAAGTTATGCCACCAGCTAGTGTTATGACAAGGCTTATATTGATTATGGTTTGGAGAAAACTTATCAGAAATCCAAACACTTACTCAAGCTTAATCGGTCTCGTTTGGTCTCTAGTTTCATTCAGATGGAATATTGAAATGCCTGCTATAATAGCAAAATCTATATCTATATTGTCTGATGCAGGACTTGGCATGGCAATGTTTAGTCTCGGTTTATTCATGGCATTGCAACCAAAAATCATAGCATGTGGAAATTCCATAGCAGCTTTTGCTATGGCTGTGAGATTCCTTACAGGTCCAGCTGTGATGGCAGCTGCTTCATTTGCTGTTGGACTCAAAGGTGTTCTTTTTCATGTTGCAATTGTTCAGGCAGCTCTTCCCCAAGGAATTGTTCCATTTGTCTTTGCTAAAGAATATAATGTACATCCTGATATTCTAAGCACAGGTGTCATTTTTGGAATGTTGATTGCATTGCCCATTACTCTAGTGTACTACATTTTAATGGGACTATGA 1710 0.3924 MITLIDFYHVMTAMVPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLSFHFIASNNPYKMNLRFLAADTLQKIMILTLLFIWSNFSKRGSLEWTITLFSLSTLPNTLVMGIPLLKGMYGEFSGSLMFPDTAGSIVSIHVDSDVMSLDGRTPLETDAEIKEDGKLHITVRKSNASRSDIYSRRSQGLSSNTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMMGAGRNSNFGPSDLNNYALSASRGVTPRPSNYEEDASNAKKLKHYPAPNPGMFSPTNKNLGSNVNVKRSNGQNQNQNQNQQKQDDLHMFVWSSSASPVSDVFGGHEFGSHDQKEVKLNVSPGKVEGHRETQEDYLEKDEFSFGNRGMEREMNNQQHDEGEKIGDGKSKVMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNIEMPAIIAKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSIAAFAMAVRFLTGPAVMAAASFAVGLKGVLFHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILMGL 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07338 569 MobiDBLite consensus disorder prediction 284 315 - -
Vifa1g07338 569 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 134 568 - -
Vifa1g07338 569 Pfam Membrane transport protein 9 133 IPR004776 GO:0016020|GO:0055085
Vifa1g07338 569 Pfam Membrane transport protein 134 564 IPR004776 GO:0016020|GO:0055085
Vifa1g07338 569 NCBIfam auxin efflux carrier 1 569 IPR014024 -
Vifa1g07338 569 MobiDBLite consensus disorder prediction 182 203 - -
Vifa1g07338 569 MobiDBLite consensus disorder prediction 277 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07338 Vifa-Chr1 1130059635 1130063272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07338 1 560 Organic Solute Cotransporters AT1G73590 67.143 0.0 785
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07338 K13947 - gmx:100499637 939.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07338 1 1130059635 1130063272 Vifa1g07338 1 1130059635 1130063272 ECH
Vifa1g07338 1 1130059635 1130063272 Vifa1g07338 1 1130059635 1130063272 PCT