Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07281 ATGGACCCATCCTCGATCTCTTCACCTTCAACTCCGGCTCCCAACGCCGTCCCCTTCGCCGTTGAACCAAACAACCACCTTCCATCTCCGTCGTTAAACCACCCTCCCTACGCTGAGATGATTTACACTGCTATCGAAGCTTTGAAGGAGAAGAACGGTTCAAGCAAAAGGGCAATATCGAAATACATAGAGCAAGTTTACAGTCACCAGCTTCCACCGCCGGAATCACACTCCAACTTGTTGACTCATCACTTGAAGCGTTTGAAATCCGATGGATTACTTCAAACCATCAAGAATTCCTATATTATCCCTAGATCTGCTCCTCCACATGCTGCAACTGAACCACCGTCAACCGCAGCCGCTTCACCGTCTCAGCCTTCAAAACCCCGCGGCCGACCAAGAAAATCCGTAACCCCAACCCCAGCTCAAGCCCAGAATAACTTTACTCCTCAGCCGCTTCCTGTTGTTGTTGCTAATAATGACAACAATAACTCTCCGTTGCAGAATGCTGAGCCTGTTTGGGCTGCGCTTGGCCTTTCTGATGAGCCGTTGGATGTTCAAGCTGCTGCTACTCCGGCTGAGGGGAGTAAGAGACGTCCTGGACGTCCTCCTGGTTCGAAGAATGTGTCGAAGAATGCAACGGCCCCAAGCCCTAGCCCTAGCCAAAACCCGACTCCGATTGAAGGACAGGTTCCACCCTCTCCGGCCTCTCGCGGAAGAGGACGTCCTCCAGGTTCTAAATCTAAATCGAAGAAGAAACCTGGACGTCCTCCGAAGGTTAAGACTGATTCTCCAACTCCAGCTGCTGCGGCTTCTGATGGGACTAAGAGACGCCCTGGTCGTCCCCCGAAGAATCAGCAGCAGGATCCGACTCCGATACCGTTTGCTACTGAAGTGTCTACCGAAACGCCTCAAGTTGTTGTTCCTGAAGTGACGGTTCCTGTTGCTGCTGTGGAAGGTGGGACTGTTTTGACTCCGAGATCTAGAGGACGGCCTAGGAAGAATCCTGCTGTTGCTGCTGTTCCTGCTGTTCCGGTTTCTGTGGTTGCTGGTGAAGGCAGAGGACGTGGCCGCGGGCGAGGTCGTGGAAGAAGAGGACGCGGTGGCCGTATAGGAAATGCATTTAGAGGGATTACTCTGCGGGCTCCAGGAAAAAGGCCTGTGGGTCGTCCAAAGAAGGGAACAACACCTGCTACTGCTAGTGGTTCACAAAATGCTGCTAATGAAGTTGATCTCAGAAGGAAACTTGAACACTTTCAAGGAAAAATCAAGGAATCTCTTGCAGTAATCAAACCACATTTTGACCATCAAAGTCCAGTCACTGCACTTGCGGCAATTCAAGAGTTAGAAATTCTCGGAGCCATGGATCTTAGTGAACCACTAAAGGATGAACCACATCCATTGCAGCCAAATGCACCAGCACAAGATCAGCCACTACAAGCGGTGGCACAGCCTCAGGAATATTTTATCATGGTCTTTGGATTTGATTATGAACAACTTTGTACAAATATATACACCATTGAATTCCAAAAGCGGGGTTTACCACACGCCCATATACTATTATTCTTGCATCCTTCAAGCAAGTATCCGACTCCAGATGATATAAACAAGATCATTTCAGCAGAGATACCAACGGAAGAAGATGATAGGCAACTCTACCATTTGGTCAAGACACATATGATTCATGGCCCATGTGGTTTAGCAAATGCGAATTCAACTTGCATGAAAAATGGAAAGTGCTCAAAATACTTTCCAAAGAAATATCAAACCGAAACCATTGTTGATCAGGATGGATATCCCGTGTACCGAAGAAGAGAAACTGGTAATACAGTGCTGAAAAAACACGTTCAACTTGATAACAGATATGTAGTTCCTTACAATCCATATTTGTTGAAGAAATTCCAAGCACACATCAATATGGAGTGGTGTAATCAAAGTACTTCGGTTAAATACTTATTTAAGTATATTAACAAGGGGTATGATAGAATTACTGCTGCTGTTGTCCAAACTGACGGTGATGGATCTCCCTCGGTCAGAATGGTTGACGAAATCAAGCAATATCTTGATTGCAGATATATCTCACCAAGTGAGACATGTTGGAGACTTTTTTCATTTCCTATTCATGGTAGATCACCCACAGTTGAAAGGTTGTTCTTTCATCTTGAAGGAGATAACTCTGTTTATTATACCGATTATGAATTGATAGATGAGGTGCTTGACAAACCAACTGTGAAAGAATCTATGTTTACGGCATGGATGGAAGCAAACAAAGCATACCCAGAGGCAAAAAATTTGACGTACTCACAATTTCTTTCCAAATTTGTTTATGATAAAAGATACCGTCGATGGAGACCGCGTAAAAGAGGAAATACAATTGGCAGACTTATTTGGGTCCCTCCAAGTACGGGTGAGTTATATTTCTTGAGAATGATGCTAACAGTCGTCAAAGGTCCAACTTACTACGAGGATATAAAATTTGTGGGTGGAAAAGTTCAGGATTCTTTTAGGGATGCATGCTTCGAAATGGGCTTTCTTAACGATGACAAGGAATATGTTGCAGCCATCGACGAAGCAAAGAATTGGGGTTCCGGGCATTTTTTACGAAAGTTATTTGTCACTATGTTACTATCCGGTACTGTCAATAGACCACGACATGTTTGGGAAAAAACTTGGAGGACGTTATCTGATGGTATCCTCTACCAACAAAGGCAAAAAACAAATAGAAGAGAATTGCAGCTATCGGACAATGAGTTAAAGAATCTCACACTAATTGAGATTGAGAACATGATGCAATCGAATCGAAGAAGTTTGCATGAATTTAAATGTATGCCGTATCCAGATTCATACATCACAAAACATGTTGGCAATAGGCTTATTTATGACGAACTTAATTACGATGCCGATACCGAGAAACAGAAATTCCAAGAACTTTTTCATGCCCTTACAGATGAACAACATTTGATATTTGAGAAAATCATGGATGCTGTTAACAAACAGAGTGGAGGGGTATTTTTCTTACATGGTTACGGAGGGACTGGTAAAACTTTCATGTGGAGAACACTATCAAGTGCACTTCGTTCTCAAAAAAAAATTGTTCTTACTGTTGCTTCAAGTGGGATAGCTTCGTTATTATTGCCGGGTGGAAGAACAACACACTCAAAGTTCAAAATACCTGTGCCAACGCTTGACAACTCAACTTGCAACATCGACAAAGACACCGAACATTCTCAATTATTTGAAGCAACGGATGTGATAATATGGGATGAGGCACCTATGTCTCACAAGAACTGCTTCGAAGCATTGGATAAAACCCTTAAAGATGTAATGAGCAAAAAGGGTGTTGAGAATACTATTTTTGGTGGAAAAGTTGTTGTATTTGGAGGAGATTTTAGACAGATTCTTCCTGTTGTTCCAAGAGTTGGGCGTTCTGATATTGTTCATGCATCAATTAGTTCATCTTATGTATGGGATTATTGCCAGATTTGTGAACCCAATGATGGTTTGGTTGATATTGAAATTCCTCAAGAGCTATTAATATCAAATTTTGATGATCCTATAAGAGCAATTGTTGAAAACACATATGCCAATTTGTTGGAAAAATATCAAGATGTTGAATTCTTACAAGGAAAGGCTATTCTTGCTTCAACCATTGAAGTTGTGGACAAAATCAATCATTATATATTAGACTTGATACCAGGAGAAGAGAAAGAGTATTTGAGTTTTGATTCCATTGATAGAACAGATTCAAGTTATACTGAAGCATATGAAGTTCTAACTCCTGAATTTCTCAGTAAATTAAGAACGTCAGGGCTTCCCAATCATATGATCAAATTGAAGGTTGGTACACCTATTATGCTAATGAGAAATTTGGACCAAGCCGATGGGTTGTGCAACGAAACAAGATTAATTGTTTCAAGATTTGCAAATCATGTAATTGAGGCAAAAATCATGTCTGGAAAGAACATAGGTAACATTTTTTACATTCCACGAATGTCTATGTCACCTTCTGATTCACCTTGGCCATTCAAGTTGATTAGGAGACAATTTCCGATTATTGTCTCCTATGCAATGACAATTAATAAGTCACAAGATCAATCTCTTGATAGTGTTGGATTGTATTTGCCTACTCCTGTGTTTAGTCATGGTCAATTATATGTTGCAATTTTAAGAGTTAAGAGCAAAAGTGGGCTAAAAATCCTAATTCATGACAAGGAGAATGTACCGTGTTCTACTACTACTAATGTTGTGTACAAGGAAGTCTTTCAAGCACTTTGA 4275 0.4166 MDPSSISSPSTPAPNAVPFAVEPNNHLPSPSLNHPPYAEMIYTAIEALKEKNGSSKRAISKYIEQVYSHQLPPPESHSNLLTHHLKRLKSDGLLQTIKNSYIIPRSAPPHAATEPPSTAAASPSQPSKPRGRPRKSVTPTPAQAQNNFTPQPLPVVVANNDNNNSPLQNAEPVWAALGLSDEPLDVQAAATPAEGSKRRPGRPPGSKNVSKNATAPSPSPSQNPTPIEGQVPPSPASRGRGRPPGSKSKSKKKPGRPPKVKTDSPTPAAAASDGTKRRPGRPPKNQQQDPTPIPFATEVSTETPQVVVPEVTVPVAAVEGGTVLTPRSRGRPRKNPAVAAVPAVPVSVVAGEGRGRGRGRGRGRRGRGGRIGNAFRGITLRAPGKRPVGRPKKGTTPATASGSQNAANEVDLRRKLEHFQGKIKESLAVIKPHFDHQSPVTALAAIQELEILGAMDLSEPLKDEPHPLQPNAPAQDQPLQAVAQPQEYFIMVFGFDYEQLCTNIYTIEFQKRGLPHAHILLFLHPSSKYPTPDDINKIISAEIPTEEDDRQLYHLVKTHMIHGPCGLANANSTCMKNGKCSKYFPKKYQTETIVDQDGYPVYRRRETGNTVLKKHVQLDNRYVVPYNPYLLKKFQAHINMEWCNQSTSVKYLFKYINKGYDRITAAVVQTDGDGSPSVRMVDEIKQYLDCRYISPSETCWRLFSFPIHGRSPTVERLFFHLEGDNSVYYTDYELIDEVLDKPTVKESMFTAWMEANKAYPEAKNLTYSQFLSKFVYDKRYRRWRPRKRGNTIGRLIWVPPSTGELYFLRMMLTVVKGPTYYEDIKFVGGKVQDSFRDACFEMGFLNDDKEYVAAIDEAKNWGSGHFLRKLFVTMLLSGTVNRPRHVWEKTWRTLSDGILYQQRQKTNRRELQLSDNELKNLTLIEIENMMQSNRRSLHEFKCMPYPDSYITKHVGNRLIYDELNYDADTEKQKFQELFHALTDEQHLIFEKIMDAVNKQSGGVFFLHGYGGTGKTFMWRTLSSALRSQKKIVLTVASSGIASLLLPGGRTTHSKFKIPVPTLDNSTCNIDKDTEHSQLFEATDVIIWDEAPMSHKNCFEALDKTLKDVMSKKGVENTIFGGKVVVFGGDFRQILPVVPRVGRSDIVHASISSSYVWDYCQICEPNDGLVDIEIPQELLISNFDDPIRAIVENTYANLLEKYQDVEFLQGKAILASTIEVVDKINHYILDLIPGEEKEYLSFDSIDRTDSSYTEAYEVLTPEFLSKLRTSGLPNHMIKLKVGTPIMLMRNLDQADGLCNETRLIVSRFANHVIEAKIMSGKNIGNIFYIPRMSMSPSDSPWPFKLIRRQFPIIVSYAMTINKSQDQSLDSVGLYLPTPVFSHGQLYVAILRVKSKSGLKILIHDKENVPCSTTTNVVYKEVFQAL 1424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07281 1424 SMART AT_hook_2 197 209 IPR017956 GO:0003677
Vifa1g07281 1424 SMART AT_hook_2 251 263 IPR017956 GO:0003677
Vifa1g07281 1424 SMART AT_hook_2 276 288 IPR017956 GO:0003677
Vifa1g07281 1424 SMART AT_hook_2 385 397 IPR017956 GO:0003677
Vifa1g07281 1424 SMART AT_hook_2 237 249 IPR017956 GO:0003677
Vifa1g07281 1424 SMART AT_hook_2 127 139 IPR017956 GO:0003677
Vifa1g07281 1424 SMART AT_hook_2 326 338 IPR017956 GO:0003677
Vifa1g07281 1424 CDD H15 34 116 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa1g07281 1424 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 33 105 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa1g07281 1424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1117 1422 IPR027417 -
Vifa1g07281 1424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 948 1136 IPR027417 -
Vifa1g07281 1424 MobiDBLite consensus disorder prediction 117 131 - -
Vifa1g07281 1424 Gene3D - 31 114 IPR036388 -
Vifa1g07281 1424 Gene3D - 977 1154 IPR027417 -
Vifa1g07281 1424 MobiDBLite consensus disorder prediction 105 303 - -
Vifa1g07281 1424 Pfam PIF1-like helicase 1164 1307 IPR010285 GO:0000723|GO:0003678|GO:0006281
Vifa1g07281 1424 Pfam PIF1-like helicase 981 1161 IPR010285 GO:0000723|GO:0003678|GO:0006281
Vifa1g07281 1424 PRINTS AT-hook-like domain signature 324 335 IPR017956 GO:0003677
Vifa1g07281 1424 PRINTS AT-hook-like domain signature 383 393 IPR017956 GO:0003677
Vifa1g07281 1424 PRINTS AT-hook-like domain signature 237 247 IPR017956 GO:0003677
Vifa1g07281 1424 SMART h15plus2 31 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa1g07281 1424 MobiDBLite consensus disorder prediction 1 36 - -
Vifa1g07281 1424 FunFam Histone H1.2 30 113 - -
Vifa1g07281 1424 MobiDBLite consensus disorder prediction 138 170 - -
Vifa1g07281 1424 Pfam linker histone H1 and H5 family 34 99 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa1g07281 1424 SUPERFAMILY "Winged helix" DNA-binding domain 28 109 IPR036390 -
Vifa1g07281 1424 MobiDBLite consensus disorder prediction 351 410 - -
Vifa1g07281 1424 PRINTS Histone H5 signature 118 132 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa1g07281 1424 PRINTS Histone H5 signature 47 64 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa1g07281 1424 PRINTS Histone H5 signature 20 41 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa1g07281 1424 CDD SF1_C_RecD 1352 1397 - -
Vifa1g07281 1424 PANTHER UNCHARACTERIZED 503 1403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07281 Vifa-Chr1 1124229678 1124240540 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07281 - - psat:127102947 1272.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07281 1 1124229678 1124240540 Vifa1g07281 1 1124229678 1124240540 ECH