Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07218 ATGAAAATAGAGAGAAAAGAGATTATAGAAGAAGCAAAGAAACAACTATGGCTAGCAGGTCCAATGATATTTGTATGTGTGTTTCAAAACAGCTTACAAATGATATCTTTGATGTTTGTTGGACATTTGAATGAGGAATTGCTTCTTGCTGGTGCTTCTTTAGCTATTTCTTTTGTCAATGTCATTGGCTTCAATGTATTGATGGGCATGTCAAGTGCACTAGACACGTTTTGTGGTCAAGCATATGGAGCAAAACAATATCACATGGTTGGAATCTACACACAAAGAGCAATGTTAGCCACAATTCTTGTTAGTATCCCCTTATCAATTATTTTAGCATACTTAAAACCCATTTTGATTCTACTACATCAAGAGAAAGCCATTGCATCACAAGCTCAACTCTTTGCTCGTTACTCAATTCCAAGTATTTCAGCCAATGGCCTTCTTAGATGCATTGTTAAATTCCTACAAACACAAAACATAACTTTTCCTATGGTGGTTACTAGTGGACTCACTACATTGATACACGTTTTTTTAAGTTGGATTTTCATTATAAAATTTGGACTTGGTATTGAAGGAGCTGCTATTACAATTTGTATCTCGAATTGGTTTGATGTGATACTATTGGCATTTTACATCAAGCTATCTTCTTCTTGTAAAAATACTTGGGTTGGCCTTTCAAAGGAATCTCTTCACAACATTCCTCAATTTCTCAAACTTGCTTTTCCCTCCGCAATCATGGTTTGTTTGGAAACATGGACATTTGAAATAATGGTGCTTCTTTCTGGTGCTCTTTCTAATCCAAATTTGCAAACTTCAGTGCTTTCTATATGTGTTAATATAAATGGTATGTTCTGGATGATACCATTTGGAGTTAGTGTAGCTGGAAGTACAAGAATCTCAAACGAACTTGGAGCTGGATGTCCAAATGCTGCATATTTAGCTGTAATAGTGACCTTATTCATGGGCTTAATCTTTGGAGCTCTAGAGTTTGCATTTCTTATGTCGGTATGGAAAGTTTGGGGCAAAGCTTTCAGCAATGTACGTGAAGTAGTCTCTTATGTGTCTTCCATGACACTGGTTGTGGCAATCTCTATCTTTATAGATTCATTTCAAACAGCATTCCAAGGTATTGCTAGAGGATGTGGTTGGCAGAAGTTTGGTGCATATGTTAACCTAGGATCTTTTTATCTTGTTGGAATTCCTTGTTCTGTTGTCTTTGCTTTTGTCCTCCACATGAAAGGACAGGGGTTATTTTTAGGTCTTATAATAGCACTTATTATTCAAGTGGTGTGTTTTATTATCATCACATTGCGCACGGATTGGAATAAAGAAGCAAATAAGGCTGCAATAAGAGTAGGAGGTGATGGAGTTCAAGTTAATTCACTTTCACTTGAAGAAATTAATGTTGTTGGAAAACCATAG 1425 0.3614 MKIERKEIIEEAKKQLWLAGPMIFVCVFQNSLQMISLMFVGHLNEELLLAGASLAISFVNVIGFNVLMGMSSALDTFCGQAYGAKQYHMVGIYTQRAMLATILVSIPLSIILAYLKPILILLHQEKAIASQAQLFARYSIPSISANGLLRCIVKFLQTQNITFPMVVTSGLTTLIHVFLSWIFIIKFGLGIEGAAITICISNWFDVILLAFYIKLSSSCKNTWVGLSKESLHNIPQFLKLAFPSAIMVCLETWTFEIMVLLSGALSNPNLQTSVLSICVNINGMFWMIPFGVSVAGSTRISNELGAGCPNAAYLAVIVTLFMGLIFGALEFAFLMSVWKVWGKAFSNVREVVSYVSSMTLVVAISIFIDSFQTAFQGIARGCGWQKFGAYVNLGSFYLVGIPCSVVFAFVLHMKGQGLFLGLIIALIIQVVCFIIITLRTDWNKEANKAAIRVGGDGVQVNSLSLEEINVVGKP 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07218 474 Pfam MatE 243 405 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa1g07218 474 Pfam MatE 21 182 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa1g07218 474 PANTHER MULTIDRUG RESISTANCE PROTEIN 5 442 - -
Vifa1g07218 474 CDD MATE_eukaryotic 11 448 IPR045069 GO:0042910|GO:1990961
Vifa1g07218 474 NCBIfam MATE family efflux transporter 21 418 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07218 Vifa-Chr1 1115287548 1115297292 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07218 K03327 - gmx:100816863 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07218 1 1115287548 1115297292 Vifa1g07218 1 1115287548 1115297292 ECH