Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07211 ATGTCTCTTCACTCTCCATTGATTGTTGAAGAAACAAAACAAAACAGCAAGGAAGAAGATAGAAGAGAATTGATTGAAGAAGTGAAAAAGCAGTTATGGCTATCAGGACCGTTAGTTTCAGTTTCACTTTTGAATTTTGGTATCGATCTTATTTCTGTTATGTTTGTTGGCCATCTTGGTGTGTTAGCTCTTTCTGGTGCTTCCATGGCTACTTCTTTTGCTACTGTCATTGGCTACAGTTTATTGGAAGGAGTGGCAAGCGCATTGGACACATTATGTGGACAATCATATGGCGCAAAGCAGTACCGCATGTTAGGTGTACACACGCAGAGAGCAATGTTCATTCTCATGATTGTCACGATTCCCCTTGCGATTATTTTCACAAATACAAGATCCATTTTCATTTTACTCGGCCAAGATCCTGAAATATCGACGGAGGCAGGAAACTATGCTAAGTTAATGGTTCCAAGCCTTTTTGCTTATGGTCCTCTACAATGCCTCAATAGATTCTTACAAACACAAAATATTGTATTTCCAATGATGTTTAGCTCTGCGGTTACGACATTACTTCATATTCCTCTATGTTGGATTATGGTATACAAGTCTGGCTTAGGTAGCAAAGGGGCTGCCATAGCAATTTCAATGTCTGAATGGTTGAATGTTATTATACTCTCACTTTATATCAAGTTTTCTCCTTCATGTAAAAATACTTGGCATGGATTTTCCAAGGAGGCTCTAGCACTTAACAACATCCCTATTTTCTTGAAGCTTGCTATTCCTTCAACTGTAATGGTTTGCTTGGAAATATGGTCATTTGAATTAATGGTTCTCCTTTCTGGTCTTCTTCCAAATCCAAAGTTAGAAACATCAGTGCTTTCTATTTGTTTGAATACAGAAGCAGCTATTTGGATGATCCCATTTGGACTTAGTGGAGCAATAAGCATTCGTGTTTCGAATGAACTCGGGGCTGGTAATCCACGGGCCGCACGTTTGGCAGTTTGTGTTGTTATGGTGATTACCATTATTGAGAGCATTTTAGTGGGAGCAGTGATGTTTCTTACACGCAATATATTGGGTTATGCTTATAGTAATGAAGAACAAGTTGTCAAATACATTGCAACTTTATTGCCTATTCTTGCTGTAACCCACTTTCTCGATGGGTTACAATGTGTTCTTTCAGGCACTGCTAGAGGATGTGGTCGCCAGGAAATTGGTGTTTATGTTAATCTCGGAGCATATTATTTAGTCGGGGTTCCCGTGGCCGTTGTATTAGCTTTTGTATTGCATGTTGGTGGAAAGGGGCTATTCCTTGGGATTATATGTGCACTCATTGTTCAAGTATTTGCTCTAATGATTATTACAATACGCACTGATTGGAAGAAAGAGACAAAGAAGGTTTCTGATAGAGTTAATGATTATATAACAACGGAGAGTTTAATCTCATGA 1446 0.3873 MSLHSPLIVEETKQNSKEEDRRELIEEVKKQLWLSGPLVSVSLLNFGIDLISVMFVGHLGVLALSGASMATSFATVIGYSLLEGVASALDTLCGQSYGAKQYRMLGVHTQRAMFILMIVTIPLAIIFTNTRSIFILLGQDPEISTEAGNYAKLMVPSLFAYGPLQCLNRFLQTQNIVFPMMFSSAVTTLLHIPLCWIMVYKSGLGSKGAAIAISMSEWLNVIILSLYIKFSPSCKNTWHGFSKEALALNNIPIFLKLAIPSTVMVCLEIWSFELMVLLSGLLPNPKLETSVLSICLNTEAAIWMIPFGLSGAISIRVSNELGAGNPRAARLAVCVVMVITIIESILVGAVMFLTRNILGYAYSNEEQVVKYIATLLPILAVTHFLDGLQCVLSGTARGCGRQEIGVYVNLGAYYLVGVPVAVVLAFVLHVGGKGLFLGIICALIVQVFALMIITIRTDWKKETKKVSDRVNDYITTESLIS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07211 481 NCBIfam MATE family efflux transporter 37 435 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa1g07211 481 CDD MATE_eukaryotic 27 465 IPR045069 GO:0042910|GO:1990961
Vifa1g07211 481 PANTHER MULTIDRUG RESISTANCE PROTEIN 21 459 - -
Vifa1g07211 481 Pfam MatE 260 423 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa1g07211 481 Pfam MatE 37 197 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07211 Vifa-Chr1 1114315860 1114317818 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07211 K03327 - gmx:100815319 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07211 1 1114315860 1114317818 Vifa1g07211 1 1114315860 1114317818 ECH