Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07199 ATGGGGATACCTGGAACGAGCAATCAGAATAATGGACAACAATGGTTAGGCATAACTGAGCCGATTTCGTTGGCTGGACCAACTGAGGAAGATGTGACCAAGACTCGTGAACTTGAAAAGTATTTGCAAGGTGTTGGATTGTATGAGAGTCAGCAGGAGGCTGTGGGTAGAGAGGAAGTGCTTGGCAGGCTAGACCAGATTGTGAAGATTTGGGTTAAGACCATTAGCCGGGCAAAGGGATTCAATGAACAACTGGTGCACGAAGCAAATGCTAAGATTTTCACTTTTGGCTCCTATCGGCTAGGGGTGCATGGCCCTGGAGCTGATATAGATACCCTTTGTGTGGGACCAAGACATGCAACAAGAGAAGAAGATTTCTTTGGTGAGCTACAGAAGATGCTATCTGAGATGGATGAAGTAACTGAATTGCACCCTGTGCCTGATGCTCATGTCCCTGTGATGAAATTCAAGTTCAATGGAGTTTCTGTAGATCTGCTGTATGCAAGATTGGCATTGTGGGTTATTCCTGAAGACTTAGATGTATCACAGGAATCAATATTACAAAATGTAGATGAACAAACTGTTCTCAGTCTCAATGGATGTAGAGTGACTGATCAAGTCCTGCGTTTAGTTCCAAATATTCAGAGTTTTCGCACAACACTGAGATTCATGAGGTTTTGGGCAAAGCGCCGTGGTGTATATTCCAATGTTGCTGGTTTTCTTGGTGGTATAAATCTGGCATTGCTTGTTGGTCGAATATGCCAGCTTTATCCTAATGCGCTGCCTAATATGCTGGTGTCTCGATTCTTTAGAGTATATACTCAGTGGCGATGGCCAAATCCAGTCATGCTTTGTGCTATTGAAGAAGGATCTCTTGGACTATCGGTTTGGGATCCTAGAAGAAATCCCAAAGATAGATATCATCTAATGCCTATAATTACTCCTGCTTATCCTTGCATGAACTCTACTTACAATGTTACAACTAGTACACTGCGTATTATGTCGGAGGAGTTTAAGAGGGGAAGTGAAATATGTGAGGCTATGGAGGCCAGCAAGGATGATTGGGATACTCTTTTTGAGCCTTATCCCTTTTTTGAGGCTTACAAGAATTACTTACAGATAGACATTACAGCAGAGAATCCTGACGACCTTAGACAGTGGAAAGGATGGGTTGAGTCTCGTCTCCGCCAGTTGACACTGAAGATTGAGCGGTACACTTATGGCATGCTTCAGTGTCACCCATATCCTGGCGAATTTTCAGACAAATCTAGATCCTTTCACCACTGTTACTTCATGGGTCTGCAGCGTAAACAAGGAGTTCCGGTAAACGAAGGTGAACAATTTGATATTAGGCTAACTGTAGATGAATTCAAGCATTCTGTCAACGCGTACACTCTATGGAAACCGGGAATGGATATCCACGTCTCCCATGTGAAACGCCGGAACATACCAACCTTCATATTTCCTAGTGGTGTTCGGCCTTCCTACTCTTCTAAAGTAAGCGGTGAGAATAGACAAAGTTCGAAATCAAGGGTTAGTGGCCAAAGTCAAGCTGAAAAGTCTCAAGGAGGTAAAACAGCTGCACTTGGAGCCGATGATGAAAGAAAGAGAAAGCGATTGGAGGATAATAACAACTCGAGGGTTTCAAAGACCTTTGTATCTTCATCCCCTCCAAACAAGGAAGTTCATGAAGATGTAGCTCCTATTAGTGCTAGTAGTTCCTTTTCGATGAAATTAGATGACTCTGAAGTCAACAGTATGGGTGCACAGAAGAGTGGGATACCTTGTCTAAAATCAGTCGATAAAGTTCCTTCAAGGGAGAGTGAAACCAATGGATCAGTGATGGCAAACCAGCAAGTTACTGCTCCTGATGCATCAAACAATAAAGAAGAAGAACGACTAGCTATCGAGCAGATTATGTCTGGTCCGTATGACGCGCATCAAGTTTTGGCCGAAGAACCTGAAGAGCTTGAAGAAGACTTGGGGTATAAAAATCAAGTCAAAGATAATGGCGGGAGTGTGAAAAGCAACAACTCTGACTCTTCAAACTCAAATATTCCGATGGTGGAAGAGCTAGTTATTCCTAAGGAAACTGTTTGTTCAACTCATTCATTCTCTAATGGAGGCTTGGAGGAGCTTGAGCCTGCTGAGCTGACAGCACCATTGTTATGTGGAATTCCTGCTCCTGTACCCCAGAGGAAGCCTCTTATCAGGTTGAACTTCACTTCTTTAGGGAAAGCAGTGGATAAAAGTTCTTAG 2259 0.4325 MGIPGTSNQNNGQQWLGITEPISLAGPTEEDVTKTRELEKYLQGVGLYESQQEAVGREEVLGRLDQIVKIWVKTISRAKGFNEQLVHEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELQKMLSEMDEVTELHPVPDAHVPVMKFKFNGVSVDLLYARLALWVIPEDLDVSQESILQNVDEQTVLSLNGCRVTDQVLRLVPNIQSFRTTLRFMRFWAKRRGVYSNVAGFLGGINLALLVGRICQLYPNALPNMLVSRFFRVYTQWRWPNPVMLCAIEEGSLGLSVWDPRRNPKDRYHLMPIITPAYPCMNSTYNVTTSTLRIMSEEFKRGSEICEAMEASKDDWDTLFEPYPFFEAYKNYLQIDITAENPDDLRQWKGWVESRLRQLTLKIERYTYGMLQCHPYPGEFSDKSRSFHHCYFMGLQRKQGVPVNEGEQFDIRLTVDEFKHSVNAYTLWKPGMDIHVSHVKRRNIPTFIFPSGVRPSYSSKVSGENRQSSKSRVSGQSQAEKSQGGKTAALGADDERKRKRLEDNNNSRVSKTFVSSSPPNKEVHEDVAPISASSSFSMKLDDSEVNSMGAQKSGIPCLKSVDKVPSRESETNGSVMANQQVTAPDASNNKEEERLAIEQIMSGPYDAHQVLAEEPEELEEDLGYKNQVKDNGGSVKSNNSDSSNSNIPMVEELVIPKETVCSTHSFSNGGLEELEPAELTAPLLCGIPAPVPQRKPLIRLNFTSLGKAVDKSS 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07199 752 Gene3D Poly(A) polymerase predicted RNA binding domain 363 478 - -
Vifa1g07199 752 PANTHER POLY A POLYMERASE 8 539 - -
Vifa1g07199 752 Gene3D Beta Polymerase, domain 2 49 205 IPR043519 -
Vifa1g07199 752 SUPERFAMILY Nucleotidyltransferase 17 210 IPR043519 -
Vifa1g07199 752 MobiDBLite consensus disorder prediction 494 563 - -
Vifa1g07199 752 MobiDBLite consensus disorder prediction 669 685 - -
Vifa1g07199 752 FunFam Poly(A) polymerase alpha, putative 49 205 - -
Vifa1g07199 752 FunFam Nuclear poly(A) polymerase 4 363 478 - -
Vifa1g07199 752 Pfam Poly(A) polymerase predicted RNA binding domain 364 423 IPR007010 GO:0003723|GO:0043631
Vifa1g07199 752 CDD NT_PAP_TUTase 57 211 - -
Vifa1g07199 752 Pfam Poly(A) polymerase central domain 17 361 IPR007012 GO:0043631|GO:1990817
Vifa1g07199 752 Gene3D - 17 359 - -
Vifa1g07199 752 MobiDBLite consensus disorder prediction 665 685 - -
Vifa1g07199 752 Pfam Nucleotidyltransferase domain 77 170 IPR002934 GO:0016779
Vifa1g07199 752 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 362 488 IPR011068 GO:0003723|GO:0016779|GO:0031123
Vifa1g07199 752 FunFam Putative poly(A) polymerase gamma 178 359 - -
Vifa1g07199 752 SUPERFAMILY PAP/OAS1 substrate-binding domain 212 361 - -
Vifa1g07199 752 MobiDBLite consensus disorder prediction 529 545 - -
Vifa1g07199 752 MobiDBLite consensus disorder prediction 494 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07199 Vifa-Chr1 1112014179 1112019530 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07199 K14376 - gmx:100816915 1256.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07199 1 1112014179 1112019530 Vifa1g07199 1 1112014179 1112019530 ECH