Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07073 ATGGTATCCGAATCGGAACTCATCGACCGCCTCCGCCAGTTCCTCGGTAGCTCCGACCTTAACACTACCACAACCTCCACCGTCCGCCGTCAGTTAGAGAGCGATTTCGGAATCGATTTGTCTGATCGAAAAGCGTTCGTTAGAGAACAAGTAGACTCGTTCCTTCAAAGCGTTAACCAACATCAAGAAGAAGATGAACCGCAAAACGACGACGCTGTTGAAGATGCGGGTAAACCAGAACCAAACCAAGGTTCTGGTTCGAAGGAAGAAACCGAAGAAGAAGGTGGTGATAATGAGGAAAAGGAAGAGGCGGAAGAAAAACCTAAGCGAACCAGAAGTGTGAAGAAGAAGAAGAAGAAGACCAAGAGTAAAAAACGATCTAACAAGTCAGGTGATGAGGTAGTAAAGAAAAAAGGTGGCGGTGGTTTGAATAAAACTTGTAGCCTGTCTCCACAACTTCAGGAAGTCACTGGAGCACCAGAGATGGCTAGGACTGAGGTTGTTAAGCAATTGTGGGCCTATATTAGGGAGAAAAATTTGCAAGACCCGGCCAATAGGCGAAATATCAATTGTGATGGACCACTGCGTGCTCTTTTTGGTGTCGATTCCATCAATATGCTCCAAATGAATAAAGTATTGTCAAAGCATATCTGGCCACTGGACTCGGATGATGTTATCCAGATGATGATTCAAATGAGCCGAAAGGAAAGGAAAAACGGCAGAAGGGAGGATCTGGAAAAGGTTTGCTGGTTCCACTTCAACTATCTGATGCCCTTGCGAAGTTCCTTGGAGAAGAGTGAACTATCAAGATCTGAAGTCATTAAAAGAATGTGGGATTATATAAAAGGAAACAACCTTCAGGATCCTTCTAACAAGAGGCAAATAATATGCGACGAAAAGTTGAAAGAGACTCTTTGGACATAG 924 0.4405 MVSESELIDRLRQFLGSSDLNTTTTSTVRRQLESDFGIDLSDRKAFVREQVDSFLQSVNQHQEEDEPQNDDAVEDAGKPEPNQGSGSKEETEEEGGDNEEKEEAEEKPKRTRSVKKKKKKTKSKKRSNKSGDEVVKKKGGGGLNKTCSLSPQLQEVTGAPEMARTEVVKQLWAYIREKNLQDPANRRNINCDGPLRALFGVDSINMLQMNKVLSKHIWPLDSDDVIQMMIQMSRKERKNGRREDLEKVCWFHFNYLMPLRSSLEKSELSRSEVIKRMWDYIKGNNLQDPSNKRQIICDEKLKETLWT 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07073 307 SUPERFAMILY SWIB/MDM2 domain 140 221 IPR036885 -
Vifa1g07073 307 Pfam SWIB/MDM2 domain 145 217 IPR003121 -
Vifa1g07073 307 Pfam SWIB/MDM2 domain 258 303 IPR003121 -
Vifa1g07073 307 Gene3D SWIB/MDM2 domain 137 225 IPR036885 -
Vifa1g07073 307 Gene3D SWIB/MDM2 domain 237 306 IPR036885 -
Vifa1g07073 307 ProSiteProfiles SWIB/MDM2 domain profile. 142 219 IPR003121 -
Vifa1g07073 307 FunFam Upstream activation factor subunit 136 225 - -
Vifa1g07073 307 SUPERFAMILY DEK C-terminal domain 3 56 - -
Vifa1g07073 307 CDD SWIB-MDM2_like 147 217 - -
Vifa1g07073 307 ProSiteProfiles SWIB/MDM2 domain profile. 244 307 IPR003121 -
Vifa1g07073 307 SUPERFAMILY SWIB/MDM2 domain 264 304 IPR036885 -
Vifa1g07073 307 SMART swib_2 253 305 IPR019835 -
Vifa1g07073 307 SMART swib_2 143 222 IPR019835 -
Vifa1g07073 307 CDD SWIB-MDM2_like 258 302 - -
Vifa1g07073 307 Gene3D - 1 57 - -
Vifa1g07073 307 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 236 303 - -
Vifa1g07073 307 Pfam DEK C terminal domain 2 55 IPR014876 -
Vifa1g07073 307 MobiDBLite consensus disorder prediction 111 125 - -
Vifa1g07073 307 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 1 56 IPR014876 -
Vifa1g07073 307 MobiDBLite consensus disorder prediction 54 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07073 Vifa-Chr1 1091991138 1091995171 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vifa1g07073 SWIB 4.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07073 K15223 - gmx:100784838 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07073 1 1091991138 1091995171 Vifa1g07073 1 1091991138 1091995171 ECH