Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07047 ATGAGGTCTTCTTCTTCTTCTACTACTACTACTGCTAATCCGGGTACGATCAACATCGCCGCGAGTTCTCAGAAGCTTGATGTTGATAATCGAATTGCTCTTCGGTTCTATTATCGGATTGCGGATAACATACTTCGACAGGCCGACATCTTTCGCGCAGAGAAGAACATTATTGACCTATATGTCATGCTTTTAAGATTTTCTAGTTTGGCATCTGAGACAATACCGCGTCACCGAGAGTATAAATCATCTCCACAAACCAAGAAACAATCATTGAAAAAGAGATTGCTGATTTCCTTGAATGAATTGGAGAAGCTGAAACCATTGGCCCAACAGAAGATCAACGAGCTTAACAGCAGAAATGCTTTCCGACAAAATGGACGGGGAAATTTTCATTCAAATAATAACGTGGATTTTTCTTCTGTGGAAAAGCAAACTTTGGCTGGTAATGGCCAAATAAAGCCGGTCAGAGCAACTGCTAGGGAATTTGCTTACCAAGGATCAAGTGGTCAACATTTCTCGTATGTCAGACCCGTGGAAGAGCAAGTGCGAAGACTATCTCTAACTCTGCCACCTCCAAAGGAGGAAACTCTCTCTAGACATTCTATCCTTGGTCCGCATGGGCTTAATGGGCAGTGGTGGTCACCTACTATTGACACAGGGGTCAGGTATCCATCCGACATAGATCTGTCTCCAGTTGAACTGCCAAGCTTGCAACGCCAATTGGAAGATGTGTCTCTGAGTAATAAAGATAATAATAGCATTGCAGAACTCCAAAAATTAGATTTAAATTCAATTCCTACCGAGAGCGAAGACAGCCAGCCCCAGCGCGCTCAAGAATCACCTTCTCTTATATCTTTTGAAGCAACAGAAGAATCCTCTGCTCAAATAGAAATTATTAGACAACCTTCTCCTCCACCCGTACTTGCTGAAGTGCATGATTTGGTCCCTGCAATGTCACCTCACATTAATGAGGCAGGATGTAAGGCAGAGATTCCATCATCTGATAGCAGTGTTAATTCCGAGTCTCCTCTGCAATTGCACATTTCAACTGCTTTGATGGAGAACTTTATGAATCTCGCCCAGTCAAATACTAAGAAAAATTTGGAAACTTGTGGTGTCCTTGCTGGTTTGCTTAAAAACAGAAAATTTTATATTACCGCTCTAATAATCCCAAAGCAGGAGTCAACATCAGATTCTTGTCAGACTACAAATGAAGAGGAAATATTTGAAGTGCAGGATAAACGATCACTTTTCCCCCTTGGGTGGATCCATACACATCCTACTCAATCTTGTTTCATGTCCTCAATTGATGTGCACACTCATTACTCGTATCAGATTATGCTGCCAGAATCTGTTGCAATAGTCATGGCACCGACAGATAGTTCAAGAAAACATGGTATTTTTCGGCTGACAACCCCCGGTGGAATGTCTGTTATTAAACAATGTGATCAACGCGGCTTTCATCCACATAATCAACCTCCAGATGGTGGCCCTATTTATGATACTTGTACAGATGTTTACATGAACCCAGATTTAAAATTCGAAGTCATCGATCTCCGGTGA 1566 0.4189 MRSSSSSTTTTANPGTINIAASSQKLDVDNRIALRFYYRIADNILRQADIFRAEKNIIDLYVMLLRFSSLASETIPRHREYKSSPQTKKQSLKKRLLISLNELEKLKPLAQQKINELNSRNAFRQNGRGNFHSNNNVDFSSVEKQTLAGNGQIKPVRATAREFAYQGSSGQHFSYVRPVEEQVRRLSLTLPPPKEETLSRHSILGPHGLNGQWWSPTIDTGVRYPSDIDLSPVELPSLQRQLEDVSLSNKDNNSIAELQKLDLNSIPTESEDSQPQRAQESPSLISFEATEESSAQIEIIRQPSPPPVLAEVHDLVPAMSPHINEAGCKAEIPSSDSSVNSESPLQLHISTALMENFMNLAQSNTKKNLETCGVLAGLLKNRKFYITALIIPKQESTSDSCQTTNEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPTDSSRKHGIFRLTTPGGMSVIKQCDQRGFHPHNQPPDGGPIYDTCTDVYMNPDLKFEVIDLR 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07047 521 Gene3D Cytidine Deaminase, domain 2 328 521 - -
Vifa1g07047 521 SMART pad1_6 346 474 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vifa1g07047 521 CDD MPN_AMSH_like 346 521 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Vifa1g07047 521 Pfam USP8 dimerisation domain 20 107 IPR015063 -
Vifa1g07047 521 FunFam AMSH-like ubiquitin thioesterase 3 332 521 - -
Vifa1g07047 521 FunFam AMSH-like ubiquitin thioesterase 3 13 129 - -
Vifa1g07047 521 Coils Coil 100 120 - -
Vifa1g07047 521 SUPERFAMILY JAB1/MPN domain 346 477 - -
Vifa1g07047 521 Gene3D - 5 136 - -
Vifa1g07047 521 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 344 450 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vifa1g07047 521 PANTHER AMSH-LIKE PROTEASE 13 521 - -
Vifa1g07047 521 ProSiteProfiles MPN domain profile. 347 477 IPR037518 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07047 Vifa-Chr1 1089071046 1089076595 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07047 K11866 - gmx:100804754 813.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07047 1 1089071046 1089076595 Vifa1g07047 1 1089071046 1089076595 ECH