Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07017 ATGAGTAGAAAGAAAAGGGTATTTTCCATTGAAAATATTGAAGAGGTTGCTGTGGATTTCTTCAACTATCTTTTGCAGGAGAAGCCAAAGATTTCGTTTTTCATTCCATTTATTTTGATTGCTTTGGTTATTGAGAAATGGGTCTTCTCTTTCTCTACTTGGGTTCCTCTTGCACTTGCTGTTTGGGCAACTATACAGTATGAGAGATACCAACGCAAACTACTTGTGGAGGATTTGGATAAGAAATGGAAGCGAATAATATTGAATAACTCGCCCATTACACCATTGGAGCACTGTGAATGGCTGAATAAATTGTTGACTGAAATCTGGCCCAACTATTTTAATCCCAAGCTTTCATCAAGGTTAAAAGCTATAGTTGAGGCACGTTTAAAGCTCCGGAAACCAAGACTTCTTGAAAGAGTTGAGCTGCAGGAGTTTTCACTAGGATCATGCCCTCCTAGCTTAGCCTTGCAAGGGATGCGGTGGTCAACTATCGGCGATCAGCGAGTTATGCAACTTGGCTTTGATTGGGACACCAATGAAATGAGCATTTTGATGCTTGCTAAGCTAGCGAAACCATTGATGGGAACTGCACGAATCGTGATTAACAATCTTCATATCAAGGGTGATCTTATCTTAACGCCGATTCTAGATGGAAAAGCACTTTTATATTCATTTGTATCGACTCCTGAGGTGAGAGTAGGAGTTGCCTTTGGAAGTGGTGGAAGTCAGTCACTTCCAGCTACTGAGTGGCCTGGTGTTTCTTCCTGGCTGGAAAAGCTTTTTACTGACACCTTGGTTAAAACCATGGTGGAACCTCGACGGCGATGTTTCACTTTGCCTGCTGTTGATTTAAGAAAAAAGGCGGTTGGAGCGATCATATATGTTAGAGTGATTTCAGCAAATAAACTTTCTAGGAGTTCCTTCAAGGCATCTAGGAGGCAACAAAATGGATCATCCAATGGTTCTTCATCAGAAGACGTTTTTGACGACAAGGACTTACACACATTTGTAGAGGTAGAAATTGAGGAATTAACGAGGAGAACAGACGTCAGACTGGGTTCAACGCCTAGATGGGATGCATCGTTTAATATGGTTATGCATGATAATGCAGGAACTCTCCGTTTCAATCTTTACGAGTGTATTCCGAACAATGTGAAGTGTGACTATCTGGGAAGTTGTGAAATAAAGATGCGGCATGTTGAAGATGATTCGACAATAATGTGGGCGATAGGACCCGATTCCGGGATTATAGCAAAGCAAGCACAATTTTGTGGAGATGAAATTGAAATGGTTGTCCCATTTGAGGGTGCCAACTTTGGAGAGTTGAAGGTGAGCATCGTAGTAAAAGAGTGGCAATTTTCCGATGGAACACATAGCTTGAACAATCTCCGTAACAACTCTCGGACGTCACTAAATGGATCATCTAATCTTCAGTTAAAAACTGGAAAGAAACTTAACATAACCGTTGTAGAAGGAAGGGATCTTGCTGCTGCAAAAGAAAAGTCCGGAAAATTTGATCCATACATTAAAGTGCAATATGGAAAGGTTATCCAGAAAACCAAGACTTCTCATACTCCAAATCCCGTCTGGAATCAGACAATTGAATTTGATGAGATTACTGGCGGTGAATACTTAAAACTAAAGGTATTTACCGAGGAGCTTTTTGGAGACGAAAACATTGGTAGTGCACAAGTAAATTTGGAAGGACTGGTTGATGGATCGGTCAGGGATGTATGGATCCCTCTTGAGAGAGTGCGTTCGGGAGAAATCAGACTTAAAATAGAAGCCGTAAAAGCGGATGATCAAGAAGGATCAACGGGTTCAGGCTCAGGAAGTGGTTGGATAGAACTTGTTTTGATTGAAGGTAGAGATCTTGTTGCCGCCGATCTTAGAGGCACGAGTGATCCGTATGTTAGGGTACACTATGGAAATTTCAAGAAAAGAACAAAGGTTATATACAAAACTCTAACCCCTCAATGGAACCAGACACTAGAATTCCCTGATGATGGAAGTCCCTTAATACTTTATGTGAAAGACCATAATGCATTACTACCTACATCAAGTATCGGTGAATGTGTCGTAGAATATCAAAGGTTACCTCCAAACCAAATGGCTGATAAATGGATACCTCTTCAAGGAGTGAAAAGAGGTGAAATTCACATTCAAATTACTAGAAAAGTTCCAGAGATGCACAAGAGGCAAAGTTTAGACTCTGAACCTTCTTTGAGTAAATTGCACCAAATTCCAACCCAGATAAAACAGATGATGATCAAGTTCAGGTCATTAATAGAAGATGGAAATCTCGAAGGACTCTCTTCAACATTGAGTGAGCTCGAAACTCTCGAAGACACACAGGAAGGATATGTATCTCAGCTAGAGACTGAACAAATGCTTCTTCTTAGCAAAATAAAGGAACTTGGCCAAGAGATTATCAATTCTTCTCCTTCCTTAAGCAGAAGATTTTCTGAAAGTGTCAACTAG 2484 0.4058 MSRKKRVFSIENIEEVAVDFFNYLLQEKPKISFFIPFILIALVIEKWVFSFSTWVPLALAVWATIQYERYQRKLLVEDLDKKWKRIILNNSPITPLEHCEWLNKLLTEIWPNYFNPKLSSRLKAIVEARLKLRKPRLLERVELQEFSLGSCPPSLALQGMRWSTIGDQRVMQLGFDWDTNEMSILMLAKLAKPLMGTARIVINNLHIKGDLILTPILDGKALLYSFVSTPEVRVGVAFGSGGSQSLPATEWPGVSSWLEKLFTDTLVKTMVEPRRRCFTLPAVDLRKKAVGAIIYVRVISANKLSRSSFKASRRQQNGSSNGSSSEDVFDDKDLHTFVEVEIEELTRRTDVRLGSTPRWDASFNMVMHDNAGTLRFNLYECIPNNVKCDYLGSCEIKMRHVEDDSTIMWAIGPDSGIIAKQAQFCGDEIEMVVPFEGANFGELKVSIVVKEWQFSDGTHSLNNLRNNSRTSLNGSSNLQLKTGKKLNITVVEGRDLAAAKEKSGKFDPYIKVQYGKVIQKTKTSHTPNPVWNQTIEFDEITGGEYLKLKVFTEELFGDENIGSAQVNLEGLVDGSVRDVWIPLERVRSGEIRLKIEAVKADDQEGSTGSGSGSGWIELVLIEGRDLVAADLRGTSDPYVRVHYGNFKKRTKVIYKTLTPQWNQTLEFPDDGSPLILYVKDHNALLPTSSIGECVVEYQRLPPNQMADKWIPLQGVKRGEIHIQITRKVPEMHKRQSLDSEPSLSKLHQIPTQIKQMMIKFRSLIEDGNLEGLSSTLSELETLEDTQEGYVSQLETEQMLLLSKIKELGQEIINSSPSLSRRFSESVN 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07017 827 Pfam C2 domain 616 712 IPR000008 -
Vifa1g07017 827 Pfam C2 domain 294 404 IPR000008 -
Vifa1g07017 827 Pfam C2 domain 485 583 IPR000008 -
Vifa1g07017 827 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 485 596 IPR035892 -
Vifa1g07017 827 Gene3D C2 domain 603 727 IPR035892 -
Vifa1g07017 827 Gene3D C2 domain 470 600 IPR035892 -
Vifa1g07017 827 CDD SMP_SF 118 278 - -
Vifa1g07017 827 PANTHER OS01G0128800 PROTEIN 8 821 - -
Vifa1g07017 827 ProSiteProfiles C2 domain profile. 464 581 IPR000008 -
Vifa1g07017 827 ProSiteProfiles C2 domain profile. 587 710 IPR000008 -
Vifa1g07017 827 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 95 281 IPR031468 GO:0008289
Vifa1g07017 827 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 608 725 IPR035892 -
Vifa1g07017 827 CDD C2 616 712 - -
Vifa1g07017 827 Gene3D C2 domain 291 453 IPR035892 -
Vifa1g07017 827 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 330 406 IPR035892 -
Vifa1g07017 827 SMART C2_3c 615 709 IPR000008 -
Vifa1g07017 827 SMART C2_3c 293 410 IPR000008 -
Vifa1g07017 827 SMART C2_3c 485 580 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07017 Vifa-Chr1 1085161913 1085166648 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07017 334 758 Lipid Metabolism Gene Families AT3G61300 22.934 1.89e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07017 - - gmx:100807475 1373.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07017 1 1085161913 1085166648 Vifa1g07017 1 1085161913 1085166648 ECH
Vifa1g07017 1 1085161913 1085166648 Vifa1g07017 1 1085161913 1085166648 PCT