Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07015 ATGGCGTTCCACAACAGCACTTTTAAACCATCACCAGAACTTCATTTCAGCAATTCATCATCATCACCATTCTCACTCTTCAACCTTTCTCGCTCCTCTTACAATCTCTTTCTCTCTCATCCCAAATCCTCGTTTCCTACTATCACTTTCTCTTCTCTCAAAACCACCCACAATTCATCTCCCAATTCTAACACCAACCCAACACCACCTTGGCTCACCAAAACCAATTCTCCCAAAAGGGTCTCTGAATCTACCATCAAAGAACAATCTTCTCAATTGCAACCTAGTAAACCCAAGAACCCGGTTGAAAGAATTGTTTTTCGGTTGAGAAACCTAGGGTTAGCCGAAGAAGAAGATGAACAACAACAACACCAACAGCAACAGCAACAAGAAGAACAAAAAGAAGAAGAAGTTAAATTGAGTGCTTTAAGTGTTACTGGAGATGAGAAATTGAGTGAGTTATTGAAGAGAAAATGGGTTCGTCCTGATGTTTTGTTGGATGAGGAGAATGAGGATGAAGAGGAGAAGATGGTGGTTCCTTGGAAGAGAGAAGAAAGGGAAATGGGTAGTGGTGGTGGTGAGATTGAACAAGAGGGGTTTAAGAAGAGGACATTAAAGGCTCCATCTTTAGCTGAATTGACACTTGAGGATGAATTGTTGAGGAGGTTGAGGAGAGAGGGTATGCGTGTTAGGGAGAGGGTTAGTGTTCCAAAAGCTGGACTTACACAAGAGGTTATGGAGAAGATTCATGAGACGTGGAGGAAAGAGGAGTTGGTTAGACTTAAGTTTCATGAGGAACTTGCTAAGAATATGAGGATTGCTCATCAGATTGTTGAGCGGCGAACAGGAGGGTTGGTTACATGGAAAGCAGGAAGTGTTATGATGGTGTACCGTGGTAAAAACTACCAAGGTCCTGCCTCCCCGAAGGAACTCGATGTGAGAGAAGGGGATGGCTTTTTTGTGCCGGATGTCTCATCAGGAAGTTTGTCGAAAACAGAAGACAGTAATGCAATCTCATCACTCGAAAACAGTGAGTCAGTTAGGAGGAACAGCAAACAGCCTGAGAACATGACAAAAGAGGAAGCAGAGTACAATGCTCTGCTCGATGGTTTAGGTCCTCGGTTTGTTGAATGGTGGGGGACAGGAATACCTCCGGTTGATGCTGACTTACTTCCGCGTGTCGTTCCTGGTTATAAAACACCTTACAGGCTTCTACCTACTGGAATGCGCTCTCGGCTAACAAGTGCAGAAATGACCGATTTAAGGAAAATTGCAAAGTCACTCCCTAGTCATTTTGCCTTAGGGAGAAATAGAAATCACCAAGGCCTAGCATCTGCTATTCTTAAGCTTTGGGAGAAGAGTTTAATCGCAAAGATTGCTGTTAAACCCGGTATCCAGAACACAAACAATAAACTAATGGCCGACGAGCTTAGTACATTAACAGGAGGTACCTTGCTGCTAAGGAATAAATATTACATTGTTATATATCGTGGGAAGGACTTTGTTCCAACAGACGTGGCTGCAGTTTTGGCCGAAAGACAGGAATTGACGAAACAAGTACAAGATGTTGAAGAGAAAGTGCGGTGCAGAGCCGTTGTTGCAACTCCATCTGGCCAAGGTGAAAAAACAGCACCGGCAGGATCTTTAGCAGAGTTTTATGAGGCTCAGGCTCGTTGGGGAAGAGACGTATCTAGTGAAGAGCATGAGAGGATGGTAGAAGAAGCTACTAAAGCCAAGAATGTTAAGCTTGTCAAACAAATCGAGCACAGACTCTCTCTTGCCGGGACCAAAATGCTTAGAGCCGAAAAGCTGTTAGCCAAAATTGAATCATCCATGGTTCAAGCTGGTCCTGATTATGACCAGGAAATAATCACAGACGAAGAACGTGTCGTGTTTCGCCGAATTGGTTTAAGAATGAAGCCATACTTACCACTTGGTATACGTGGTGTTTTTGACGGTGTCATTGAGAACATGCATTTGCATTGGAAACATCGAGAACTTGTAAAATTAATAACAAAGCAAAAAACTCTTGCTTTCGTCGAAGACACGGCAAGGTTACTTGAATATGAGAGTGGTGGAATACTTGTGGCAATAGAAAAAGTTTCTAAAGGATTTGCTCTTATTTACTATCGCGGTAAAAACTATAAGCGACCCATTACTTTAAGGCCTAGAAACCTTCTAACAAAGGCTAAGGCATTGAAGCGTTCCGTAGCCATGCAACGCCACATGGCTTTGAGTAACCATATTACAGAATTGGAAACAACAATCGAACAAATGAAACAAGAACTTGGTCTATCTGAAGATGATTGGAGCATGAAGGAAGAGCATGAAAACCAATTAGATCAAATCTCAGAATTCACCGACAGTGAAGATGATGAAGATTCTGATGGTTTTGAAGACGAGGAAGACGCTGATTGGGATGAAGACGAGGACTCCGAGTTTTCAGAACTCGAAGTCGACGAGCATCCTTAA 2472 0.4284 MAFHNSTFKPSPELHFSNSSSSPFSLFNLSRSSYNLFLSHPKSSFPTITFSSLKTTHNSSPNSNTNPTPPWLTKTNSPKRVSESTIKEQSSQLQPSKPKNPVERIVFRLRNLGLAEEEDEQQQHQQQQQQEEQKEEEVKLSALSVTGDEKLSELLKRKWVRPDVLLDEENEDEEEKMVVPWKREEREMGSGGGEIEQEGFKKRTLKAPSLAELTLEDELLRRLRREGMRVRERVSVPKAGLTQEVMEKIHETWRKEELVRLKFHEELAKNMRIAHQIVERRTGGLVTWKAGSVMMVYRGKNYQGPASPKELDVREGDGFFVPDVSSGSLSKTEDSNAISSLENSESVRRNSKQPENMTKEEAEYNALLDGLGPRFVEWWGTGIPPVDADLLPRVVPGYKTPYRLLPTGMRSRLTSAEMTDLRKIAKSLPSHFALGRNRNHQGLASAILKLWEKSLIAKIAVKPGIQNTNNKLMADELSTLTGGTLLLRNKYYIVIYRGKDFVPTDVAAVLAERQELTKQVQDVEEKVRCRAVVATPSGQGEKTAPAGSLAEFYEAQARWGRDVSSEEHERMVEEATKAKNVKLVKQIEHRLSLAGTKMLRAEKLLAKIESSMVQAGPDYDQEIITDEERVVFRRIGLRMKPYLPLGIRGVFDGVIENMHLHWKHRELVKLITKQKTLAFVEDTARLLEYESGGILVAIEKVSKGFALIYYRGKNYKRPITLRPRNLLTKAKALKRSVAMQRHMALSNHITELETTIEQMKQELGLSEDDWSMKEEHENQLDQISEFTDSEDDEDSDGFEDEEDADWDEDEDSEFSELEVDEHP 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07015 823 Gene3D - 412 505 IPR035920 -
Vifa1g07015 823 Gene3D - 623 725 IPR035920 -
Vifa1g07015 823 Gene3D - 213 312 IPR035920 -
Vifa1g07015 823 ProSiteProfiles CRM domain profile. 411 508 IPR001890 GO:0003723
Vifa1g07015 823 Coils Coil 114 137 - -
Vifa1g07015 823 ProSiteProfiles CRM domain profile. 622 722 IPR001890 GO:0003723
Vifa1g07015 823 SUPERFAMILY YhbY-like 413 503 IPR035920 -
Vifa1g07015 823 MobiDBLite consensus disorder prediction 54 98 - -
Vifa1g07015 823 MobiDBLite consensus disorder prediction 325 347 - -
Vifa1g07015 823 MobiDBLite consensus disorder prediction 784 816 - -
Vifa1g07015 823 Coils Coil 506 526 - -
Vifa1g07015 823 SUPERFAMILY YhbY-like 623 721 IPR035920 -
Vifa1g07015 823 Coils Coil 742 769 - -
Vifa1g07015 823 MobiDBLite consensus disorder prediction 54 104 - -
Vifa1g07015 823 ProSiteProfiles CRM domain profile. 213 309 IPR001890 GO:0003723
Vifa1g07015 823 FunFam CRS2-associated factor 1, chloroplastic 214 309 - -
Vifa1g07015 823 FunFam CRM-domain containing factor CFM3B, chloroplastic 623 725 - -
Vifa1g07015 823 SUPERFAMILY YhbY-like 214 306 IPR035920 -
Vifa1g07015 823 MobiDBLite consensus disorder prediction 116 137 - -
Vifa1g07015 823 FunFam CRS2-associated factor 1, chloroplastic 412 508 - -
Vifa1g07015 823 Pfam CRS1 / YhbY (CRM) domain 216 298 IPR001890 GO:0003723
Vifa1g07015 823 Pfam CRS1 / YhbY (CRM) domain 625 700 IPR001890 GO:0003723
Vifa1g07015 823 Pfam CRS1 / YhbY (CRM) domain 413 497 IPR001890 GO:0003723
Vifa1g07015 823 SMART CRS1_YhbY_2 624 711 IPR001890 GO:0003723
Vifa1g07015 823 SMART CRS1_YhbY_2 413 497 IPR001890 GO:0003723
Vifa1g07015 823 SMART CRS1_YhbY_2 215 298 IPR001890 GO:0003723
Vifa1g07015 823 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 29 802 IPR045278 GO:0000375|GO:0003729
Vifa1g07015 823 MobiDBLite consensus disorder prediction 772 823 - -
Vifa1g07015 823 MobiDBLite consensus disorder prediction 324 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07015 Vifa-Chr1 1084649031 1084653087 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07015 - - gmx:100808013 993.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07015 1 1084649031 1084653087 Vifa1g07015 1 1084649031 1084653087 ECH
Vifa1g07015 1 1084649031 1084653087 Vifa1g07015 1 1084649031 1084653087 PCT